Variant report

Variant	rs72827835
Chromosome Location	chr6:16751926-16751927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr6:16751355-16752107	MCF-7	breast:	n/a	n/a
2	HNF4A	chr6:16751692-16752054	HepG2	liver:	n/a	chr6:16751944-16751959 chr6:16751943-16751958 chr6:16751944-16751958 chr6:16751952-16751964 chr6:16751945-16751957
3	ARID3A	chr6:16751803-16752306	HepG2	liver:	n/a	n/a
4	ZNF263	chr6:16751479-16752055	HEK293-T-REx	kidney:	n/a	chr6:16751669-16751690
5	POLR2A	chr6:16751682-16752408	HepG2	liver:	n/a	n/a
6	FOSL2	chr6:16751551-16751947	A549	lung:	n/a	chr6:16751847-16751858
7	POLR2A	chr6:16751429-16751926	PFSK-1	brain:	n/a	n/a
8	POLR2A	chr6:16751293-16754429	PFSK-1	brain:	n/a	n/a
9	HNF4A	chr6:16751722-16752176	HepG2	liver:	n/a	chr6:16751944-16751959 chr6:16751943-16751958 chr6:16751944-16751958 chr6:16751952-16751964 chr6:16751945-16751957
10	POLR2A	chr6:16751440-16751958	MCF10A-Er-Src	breast:	n/a	n/a
11	GATA3	chr6:16751452-16752036	A549	lung:	n/a	n/a
12	FOXA2	chr6:16751822-16752077	HepG2	liver:	n/a	chr6:16751892-16751904

Variant related genes	Relation type
ATXN1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16879071	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72827833	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16732200-16754800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:16737600-16759400	Weak transcription	Thymus	Thymus
3	chr6:16739000-16752200	Weak transcription	HUVEC	blood vessel
4	chr6:16741200-16758200	Enhancers	Fetal Heart	heart
5	chr6:16743000-16757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:16743000-16759600	Weak transcription	Spleen	Spleen
7	chr6:16743800-16757200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:16745000-16759600	Weak transcription	Placenta	Placenta
9	chr6:16746200-16758400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:16746400-16752600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:16746400-16756800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:16746400-16758600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:16746400-16758800	Weak transcription	Fetal Thymus	thymus
14	chr6:16746800-16758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:16747000-16752600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:16748200-16754800	Genic enhancers	HepG2	liver
17	chr6:16748200-16756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:16748200-16757200	Weak transcription	Fetal Brain Male	brain
19	chr6:16748200-16758200	Weak transcription	Brain Germinal Matrix	brain
20	chr6:16748200-16758400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:16748400-16752000	Weak transcription	Stomach Mucosa	stomach
22	chr6:16748400-16753200	Weak transcription	Adipose Nuclei	Adipose
23	chr6:16748400-16758000	Weak transcription	Fetal Brain Female	brain
24	chr6:16748600-16752000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:16748600-16752400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:16748800-16752000	Weak transcription	Fetal Kidney	kidney
27	chr6:16748800-16752000	Weak transcription	Psoas Muscle	Psoas
28	chr6:16748800-16753200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:16748800-16758400	Weak transcription	Gastric	stomach
30	chr6:16748800-16758600	Weak transcription	Right Atrium	heart
31	chr6:16748800-16758800	Weak transcription	Ovary	ovary
32	chr6:16748800-16759000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:16748800-16759800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:16749200-16753400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:16749200-16758400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr6:16749600-16753600	Genic enhancers	HSMM	muscle
37	chr6:16749600-16754800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:16749800-16752600	Strong transcription	Fetal Stomach	stomach
39	chr6:16749800-16753600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:16749800-16754000	Genic enhancers	NHDF-Ad	bronchial
41	chr6:16750000-16752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:16750000-16753800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:16750200-16752400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:16750200-16752600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:16750200-16752600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:16750200-16752600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:16750200-16752600	Weak transcription	Right Ventricle	heart
48	chr6:16750200-16753200	Strong transcription	GM12878-XiMat	blood
49	chr6:16750200-16753800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:16750200-16758600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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