Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134437377..134440079-chr2:134447869..134449791,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10496709	0.83[ASN][1000 genomes]
rs12465737	0.81[ASN][1000 genomes]
rs12467346	0.85[ASN][1000 genomes]
rs12472423	0.85[ASN][1000 genomes]
rs1446748	0.85[ASN][1000 genomes]
rs1446749	0.85[ASN][1000 genomes]
rs1470510	0.84[ASN][1000 genomes]
rs1562349	0.84[ASN][1000 genomes]
rs16828705	0.85[ASN][1000 genomes]
rs16828728	0.85[ASN][1000 genomes]
rs17767492	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17767728	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1867894	0.84[ASN][1000 genomes]
rs1992783	0.84[ASN][1000 genomes]
rs1992784	0.84[ASN][1000 genomes]
rs35593895	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4369917	0.85[ASN][1000 genomes]
rs4369918	0.84[ASN][1000 genomes]
rs55715603	0.87[ASN][1000 genomes]
rs55777158	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55787899	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55932202	0.85[ASN][1000 genomes]
rs56111185	0.84[ASN][1000 genomes]
rs56160327	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56341649	0.85[ASN][1000 genomes]
rs58457553	0.84[ASN][1000 genomes]
rs6706052	0.85[ASN][1000 genomes]
rs72843245	0.87[ASN][1000 genomes]
rs72843247	0.85[ASN][1000 genomes]
rs72843252	0.84[ASN][1000 genomes]
rs72843260	0.85[ASN][1000 genomes]
rs72843263	0.85[ASN][1000 genomes]
rs7586145	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs921087	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134447400-134449400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:134447800-134449200	Enhancers	Brain Hippocampus Middle	brain
3	chr2:134448000-134448600	Enhancers	Brain Substantia Nigra	brain
4	chr2:134448000-134449200	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search: