Variant report

Variant	rs72845924
Chromosome Location	chr2:127985857-127985858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:127983318..127986030-chr2:128006327..128008431,2	MCF-7	breast:
2	chr2:127983824..127986072-chr2:128049490..128052043,3	MCF-7	breast:
3	chr2:127978350..127980779-chr2:127984214..127985920,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163161	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1803541	0.93[EUR][1000 genomes]
rs2069939	0.89[AMR][1000 genomes]
rs3732210	0.88[EUR][1000 genomes]
rs4150459	0.88[EUR][1000 genomes]
rs4150460	0.88[EUR][1000 genomes]
rs4150468	0.88[EUR][1000 genomes]
rs4150480	0.88[EUR][1000 genomes]
rs4662574	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55693032	0.88[EUR][1000 genomes]
rs55871356	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55926979	0.83[EUR][1000 genomes]
rs56000604	0.88[EUR][1000 genomes]
rs56033800	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56226037	0.88[EUR][1000 genomes]
rs56287237	0.88[EUR][1000 genomes]
rs56373535	0.88[EUR][1000 genomes]
rs56383408	0.93[EUR][1000 genomes]
rs58877895	0.88[EUR][1000 genomes]
rs6708102	0.88[EUR][1000 genomes]
rs6737103	0.88[EUR][1000 genomes]
rs6755703	0.88[EUR][1000 genomes]
rs72845929	0.93[EUR][1000 genomes]
rs72845937	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845942	0.93[EUR][1000 genomes]
rs72845943	0.93[EUR][1000 genomes]
rs72845953	0.88[EUR][1000 genomes]
rs72845958	0.88[EUR][1000 genomes]
rs72845960	0.88[EUR][1000 genomes]
rs72845961	0.81[EUR][1000 genomes]
rs72845963	0.88[EUR][1000 genomes]
rs72845964	0.88[EUR][1000 genomes]
rs72845966	0.88[EUR][1000 genomes]
rs72845967	0.88[EUR][1000 genomes]
rs72845968	0.88[EUR][1000 genomes]
rs72845969	0.88[EUR][1000 genomes]
rs72845970	0.88[EUR][1000 genomes]
rs72845971	0.88[EUR][1000 genomes]
rs72845972	0.88[EUR][1000 genomes]
rs72845973	0.80[EUR][1000 genomes]
rs72845978	0.88[EUR][1000 genomes]
rs72845980	0.88[EUR][1000 genomes]
rs72845983	0.88[EUR][1000 genomes]
rs72845984	0.88[EUR][1000 genomes]
rs72845988	0.88[EUR][1000 genomes]
rs72845989	0.88[EUR][1000 genomes]
rs72845992	0.88[EUR][1000 genomes]
rs72845995	0.88[EUR][1000 genomes]
rs72845996	0.88[EUR][1000 genomes]
rs72845998	0.88[EUR][1000 genomes]
rs72845999	0.88[EUR][1000 genomes]
rs72846001	0.88[EUR][1000 genomes]
rs72848605	0.83[EUR][1000 genomes]
rs72848607	0.83[EUR][1000 genomes]
rs72848610	0.81[EUR][1000 genomes]
rs72848614	0.83[EUR][1000 genomes]
rs72848617	0.83[EUR][1000 genomes]
rs72848619	0.83[EUR][1000 genomes]
rs72848621	0.83[EUR][1000 genomes]
rs72848623	0.83[EUR][1000 genomes]
rs72848624	0.83[EUR][1000 genomes]
rs72848625	0.83[EUR][1000 genomes]
rs72848626	0.83[EUR][1000 genomes]
rs72848627	0.83[EUR][1000 genomes]
rs72848628	0.83[EUR][1000 genomes]
rs72848629	0.83[EUR][1000 genomes]
rs72848630	0.83[EUR][1000 genomes]
rs72848635	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7559907	0.93[EUR][1000 genomes]
rs7581386	0.88[EUR][1000 genomes]
rs7591595	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006112	chr2:127830117-128032546	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2757832	chr2:127830943-128006514	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2759090	chr2:127830943-128006514	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1011378	chr2:127841930-128020546	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv999809	chr2:127841930-128032546	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1010669	chr2:127848860-128032546	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1003599	chr2:127871183-128059407	Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv535920	chr2:127871183-128059407	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127984400-127987800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:127984600-128012800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:127984800-127986200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:127984800-127988200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:127985000-127986000	Enhancers	Osteobl	bone
6	chr2:127985000-127988200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links