Variant report

Variant	rs72845961
Chromosome Location	chr2:128065654-128065655
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128063086..128065825-chr2:128211149..128213069,2	MCF-7	breast:
2	chr2:128064760..128067650-chr2:128281449..128284352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163166	Chromatin interaction

rs_ID	r²[population]
rs1803541	0.88[EUR][1000 genomes]
rs2069892	0.81[EUR][1000 genomes]
rs2069907	0.81[EUR][1000 genomes]
rs2069934	0.81[EUR][1000 genomes]
rs2069939	0.81[EUR][1000 genomes]
rs3732210	0.93[EUR][1000 genomes]
rs4150459	0.93[EUR][1000 genomes]
rs4150460	0.93[EUR][1000 genomes]
rs4150468	0.93[EUR][1000 genomes]
rs4150480	0.93[EUR][1000 genomes]
rs55693032	0.93[EUR][1000 genomes]
rs55871356	0.88[EUR][1000 genomes]
rs55926979	0.88[EUR][1000 genomes]
rs56000604	0.93[EUR][1000 genomes]
rs56033800	0.88[EUR][1000 genomes]
rs56226037	0.93[EUR][1000 genomes]
rs56287237	0.93[EUR][1000 genomes]
rs56373535	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56383408	0.88[EUR][1000 genomes]
rs58877895	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6708102	0.93[EUR][1000 genomes]
rs6737103	0.93[EUR][1000 genomes]
rs6755703	0.93[EUR][1000 genomes]
rs72845924	0.81[EUR][1000 genomes]
rs72845929	0.88[EUR][1000 genomes]
rs72845937	0.84[EUR][1000 genomes]
rs72845942	0.88[EUR][1000 genomes]
rs72845943	0.88[EUR][1000 genomes]
rs72845953	0.93[EUR][1000 genomes]
rs72845958	0.93[EUR][1000 genomes]
rs72845960	0.93[EUR][1000 genomes]
rs72845963	0.93[EUR][1000 genomes]
rs72845964	0.93[EUR][1000 genomes]
rs72845966	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845967	0.93[EUR][1000 genomes]
rs72845968	0.93[EUR][1000 genomes]
rs72845969	0.93[EUR][1000 genomes]
rs72845970	0.93[EUR][1000 genomes]
rs72845971	0.93[EUR][1000 genomes]
rs72845972	0.93[EUR][1000 genomes]
rs72845973	0.86[EUR][1000 genomes]
rs72845978	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72845980	0.93[EUR][1000 genomes]
rs72845983	0.93[EUR][1000 genomes]
rs72845984	0.93[EUR][1000 genomes]
rs72845988	0.93[EUR][1000 genomes]
rs72845989	0.93[EUR][1000 genomes]
rs72845992	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72845995	0.93[EUR][1000 genomes]
rs72845996	0.93[EUR][1000 genomes]
rs72845998	0.93[EUR][1000 genomes]
rs72845999	0.93[EUR][1000 genomes]
rs72846001	0.93[EUR][1000 genomes]
rs72848605	0.88[EUR][1000 genomes]
rs72848607	0.88[EUR][1000 genomes]
rs72848610	0.86[EUR][1000 genomes]
rs72848614	0.88[EUR][1000 genomes]
rs72848617	0.88[EUR][1000 genomes]
rs72848619	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848621	0.88[EUR][1000 genomes]
rs72848623	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72848624	0.88[EUR][1000 genomes]
rs72848625	0.88[EUR][1000 genomes]
rs72848626	0.88[EUR][1000 genomes]
rs72848627	0.88[EUR][1000 genomes]
rs72848628	0.88[EUR][1000 genomes]
rs72848629	0.88[EUR][1000 genomes]
rs72848630	0.88[EUR][1000 genomes]
rs72848635	0.88[EUR][1000 genomes]
rs72848637	0.93[EUR][1000 genomes]
rs72848642	0.93[EUR][1000 genomes]
rs72848645	0.81[EUR][1000 genomes]
rs72848646	0.81[EUR][1000 genomes]
rs72848648	0.81[EUR][1000 genomes]
rs72848651	0.81[EUR][1000 genomes]
rs7559907	0.88[EUR][1000 genomes]
rs7581386	0.93[EUR][1000 genomes]
rs7591595	0.93[EUR][1000 genomes]
rs7591718	0.81[EUR][1000 genomes]
rs7599334	0.81[EUR][1000 genomes]
rs8179521	0.93[EUR][1000 genomes]

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128052000-128066200	Weak transcription	Spleen	Spleen
2	chr2:128052200-128066000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:128052200-128066200	Weak transcription	Small Intestine	intestine
4	chr2:128052400-128070400	Weak transcription	Esophagus	oesophagus
5	chr2:128052400-128070800	Weak transcription	Colonic Mucosa	Colon
6	chr2:128052400-128071200	Weak transcription	Fetal Brain Male	brain
7	chr2:128052600-128067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:128052600-128068400	Weak transcription	Right Ventricle	heart
9	chr2:128052800-128066000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:128052800-128067600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:128052800-128070800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:128052800-128071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:128052800-128071800	Weak transcription	NHLF	lung
14	chr2:128053000-128067400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:128053000-128070400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:128053000-128070800	Weak transcription	K562	blood
17	chr2:128053000-128071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:128058600-128085600	Strong transcription	Primary B cells from cord blood	blood
19	chr2:128059400-128082800	Strong transcription	Liver	Liver
20	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:128061200-128077600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr2:128061400-128066200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:128061800-128066200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:128061800-128067800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:128061800-128068000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:128062000-128066000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr2:128062000-128077600	Strong transcription	Fetal Intestine Large	intestine
31	chr2:128062000-128077800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:128062000-128083200	Strong transcription	Primary T cells from cord blood	blood
33	chr2:128062000-128085000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr2:128062000-128086600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr2:128062200-128067800	Weak transcription	Fetal Intestine Small	intestine
36	chr2:128062400-128070800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr2:128062600-128065800	Weak transcription	Pancreas	Pancrea
39	chr2:128062600-128068200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:128062600-128069000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr2:128062600-128071800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr2:128062600-128077600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:128062600-128077800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:128062600-128077800	Strong transcription	Dnd41	blood
45	chr2:128062600-128078000	Strong transcription	Fetal Thymus	thymus
46	chr2:128062600-128083400	Strong transcription	Fetal Muscle Trunk	muscle
47	chr2:128062600-128083400	Strong transcription	Thymus	Thymus
48	chr2:128062600-128089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr2:128062800-128066600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr2:128062800-128066600	Strong transcription	HepG2	liver

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