Variant report

Variant	rs72848607
Chromosome Location	chr2:128127300-128127301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128126951..128129831-chr2:128134353..128136995,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1803541	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2069892	0.83[EUR][1000 genomes]
rs2069907	0.83[EUR][1000 genomes]
rs2069934	0.83[EUR][1000 genomes]
rs2069939	0.83[EUR][1000 genomes]
rs3732210	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4150459	0.95[EUR][1000 genomes]
rs4150460	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4150468	0.95[EUR][1000 genomes]
rs4150480	0.95[EUR][1000 genomes]
rs4662574	0.81[EUR][1000 genomes]
rs55693032	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55871356	1.00[EUR][1000 genomes]
rs55926979	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56000604	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56033800	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56226037	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56287237	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56373535	0.95[EUR][1000 genomes]
rs56383408	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58877895	0.95[EUR][1000 genomes]
rs6708102	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6737103	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6755703	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845924	0.83[EUR][1000 genomes]
rs72845929	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72845937	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72845942	0.90[EUR][1000 genomes]
rs72845943	0.90[EUR][1000 genomes]
rs72845953	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845958	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845960	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845961	0.88[EUR][1000 genomes]
rs72845963	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845964	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845966	0.95[EUR][1000 genomes]
rs72845967	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845968	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845969	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845970	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845971	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845972	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845973	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72845978	0.95[EUR][1000 genomes]
rs72845980	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845983	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845984	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845988	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845989	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845992	0.95[EUR][1000 genomes]
rs72845995	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845996	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845998	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72845999	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72846001	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72848605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848610	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72848614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848617	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848619	1.00[EUR][1000 genomes]
rs72848621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848623	1.00[EUR][1000 genomes]
rs72848624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848626	1.00[EUR][1000 genomes]
rs72848627	1.00[EUR][1000 genomes]
rs72848628	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848630	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72848635	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72848637	0.95[EUR][1000 genomes]
rs72848642	0.95[EUR][1000 genomes]
rs72848645	0.83[EUR][1000 genomes]
rs72848646	0.83[EUR][1000 genomes]
rs72848648	0.83[EUR][1000 genomes]
rs72848651	0.83[EUR][1000 genomes]
rs7559907	0.90[EUR][1000 genomes]
rs7581386	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7591595	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7591718	0.83[EUR][1000 genomes]
rs7599334	0.83[EUR][1000 genomes]
rs8179521	0.95[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128105600-128127400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:128107800-128140200	Weak transcription	Gastric	stomach
3	chr2:128109800-128134000	Weak transcription	Lung	lung
4	chr2:128110200-128127800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:128116800-128127600	Weak transcription	Thymus	Thymus
6	chr2:128120800-128139200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:128120800-128142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:128121000-128127600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:128121200-128135200	Weak transcription	Osteobl	bone
10	chr2:128121800-128127600	Weak transcription	Fetal Stomach	stomach
11	chr2:128122200-128127800	Weak transcription	Ovary	ovary
12	chr2:128122200-128128000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:128122200-128142200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:128123400-128127400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:128123400-128127400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:128123400-128127600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr2:128123400-128127800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:128123400-128127800	Weak transcription	Aorta	Aorta
19	chr2:128123400-128128200	Weak transcription	Right Ventricle	heart
20	chr2:128123400-128130400	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:128123400-128131400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:128123400-128135200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:128123400-128137600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:128123400-128140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:128123400-128144200	Weak transcription	Colonic Mucosa	Colon
26	chr2:128123600-128127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:128123600-128127800	Weak transcription	Psoas Muscle	Psoas
28	chr2:128123600-128128800	Weak transcription	Primary T cells from cord blood	blood
29	chr2:128123800-128127400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr2:128123800-128127600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:128123800-128128000	Weak transcription	Adipose Nuclei	Adipose
32	chr2:128124000-128140000	Weak transcription	Left Ventricle	heart
33	chr2:128124400-128127400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:128124400-128127600	Weak transcription	A549	lung
35	chr2:128124400-128136200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr2:128124800-128129200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr2:128125200-128131000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr2:128125400-128131200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr2:128125800-128127800	Weak transcription	Right Atrium	heart
40	chr2:128125800-128128200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr2:128125800-128136400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr2:128126800-128127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr2:128127000-128127400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
44	chr2:128127200-128127400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr2:128127200-128127400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr2:128127200-128127800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr2:128127200-128128400	ZNF genes & repeats	Fetal Muscle Leg	muscle
48	chr2:128127200-128128400	ZNF genes & repeats	Fetal Thymus	thymus
49	chr2:128127200-128129000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
50	chr2:128127200-128130000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links