Variant report

Variant	rs72848637
Chromosome Location	chr2:128151912-128151913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128061961..128064876-chr2:128150264..128151950,2	K562	blood:
2	chr2:128150462..128152634-chr2:128164204..128165891,2	K562	blood:
3	chr2:128145040..128147684-chr2:128151007..128152873,2	MCF-7	breast:
4	chr2:128143573..128147652-chr2:128148684..128152903,5	K562	blood:
5	chr2:128144670..128146902-chr2:128151414..128153529,2	MCF-7	breast:
6	chr2:128142915..128147569-chr2:128148942..128152292,5	K562	blood:

Variant related genes	Relation type
ENSG00000236682	Chromatin interaction
ENSG00000169967	Chromatin interaction

rs_ID	r²[population]
rs1803541	0.86[EUR][1000 genomes]
rs2069892	0.87[EUR][1000 genomes]
rs2069907	0.87[EUR][1000 genomes]
rs2069934	0.87[EUR][1000 genomes]
rs2069939	0.87[EUR][1000 genomes]
rs3732210	0.90[EUR][1000 genomes]
rs4150459	0.90[EUR][1000 genomes]
rs4150460	0.90[EUR][1000 genomes]
rs4150468	0.90[EUR][1000 genomes]
rs4150480	0.90[EUR][1000 genomes]
rs55693032	0.90[EUR][1000 genomes]
rs55871356	0.95[EUR][1000 genomes]
rs55926979	0.86[EUR][1000 genomes]
rs56000604	0.90[EUR][1000 genomes]
rs56033800	0.95[EUR][1000 genomes]
rs56226037	0.90[EUR][1000 genomes]
rs56287237	0.90[EUR][1000 genomes]
rs56373535	0.90[EUR][1000 genomes]
rs56383408	0.86[EUR][1000 genomes]
rs58877895	0.90[EUR][1000 genomes]
rs6708102	0.90[EUR][1000 genomes]
rs6737103	0.90[EUR][1000 genomes]
rs6755703	0.90[EUR][1000 genomes]
rs72845929	0.86[EUR][1000 genomes]
rs72845937	0.81[EUR][1000 genomes]
rs72845942	0.86[EUR][1000 genomes]
rs72845943	0.86[EUR][1000 genomes]
rs72845953	0.90[EUR][1000 genomes]
rs72845958	0.90[EUR][1000 genomes]
rs72845960	0.90[EUR][1000 genomes]
rs72845961	0.93[EUR][1000 genomes]
rs72845963	0.90[EUR][1000 genomes]
rs72845964	0.90[EUR][1000 genomes]
rs72845966	0.90[EUR][1000 genomes]
rs72845967	0.90[EUR][1000 genomes]
rs72845968	0.90[EUR][1000 genomes]
rs72845969	0.90[EUR][1000 genomes]
rs72845970	0.90[EUR][1000 genomes]
rs72845971	0.90[EUR][1000 genomes]
rs72845972	0.90[EUR][1000 genomes]
rs72845973	0.83[EUR][1000 genomes]
rs72845978	0.90[EUR][1000 genomes]
rs72845980	0.90[EUR][1000 genomes]
rs72845983	0.90[EUR][1000 genomes]
rs72845984	0.90[EUR][1000 genomes]
rs72845988	0.90[EUR][1000 genomes]
rs72845989	0.90[EUR][1000 genomes]
rs72845992	0.90[EUR][1000 genomes]
rs72845995	0.90[EUR][1000 genomes]
rs72845996	0.90[EUR][1000 genomes]
rs72845998	0.90[EUR][1000 genomes]
rs72845999	0.90[EUR][1000 genomes]
rs72846001	0.90[EUR][1000 genomes]
rs72848605	0.95[EUR][1000 genomes]
rs72848607	0.95[EUR][1000 genomes]
rs72848610	0.93[EUR][1000 genomes]
rs72848614	0.95[EUR][1000 genomes]
rs72848617	0.95[EUR][1000 genomes]
rs72848619	0.95[EUR][1000 genomes]
rs72848621	0.95[EUR][1000 genomes]
rs72848623	0.95[EUR][1000 genomes]
rs72848624	0.95[EUR][1000 genomes]
rs72848625	0.95[EUR][1000 genomes]
rs72848626	0.95[EUR][1000 genomes]
rs72848627	0.95[EUR][1000 genomes]
rs72848628	0.95[EUR][1000 genomes]
rs72848629	0.95[EUR][1000 genomes]
rs72848630	0.95[EUR][1000 genomes]
rs72848635	0.95[EUR][1000 genomes]
rs72848642	1.00[EUR][1000 genomes]
rs72848645	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72848646	0.87[EUR][1000 genomes]
rs72848648	0.87[EUR][1000 genomes]
rs72848651	0.87[EUR][1000 genomes]
rs7559907	0.86[EUR][1000 genomes]
rs7581386	0.90[EUR][1000 genomes]
rs7591595	0.90[EUR][1000 genomes]
rs7591718	0.87[EUR][1000 genomes]
rs7599334	0.87[EUR][1000 genomes]
rs8179521	1.00[EUR][1000 genomes]

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146000-128158400	Weak transcription	Ovary	ovary
2	chr2:128146400-128155200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:128146600-128152000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:128146600-128152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:128146600-128154200	Weak transcription	Brain Germinal Matrix	brain
7	chr2:128146600-128155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:128146600-128155000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:128146600-128155200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:128146600-128155200	Weak transcription	Esophagus	oesophagus
11	chr2:128146600-128155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:128146600-128155400	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:128146600-128155400	Weak transcription	Brain Substantia Nigra	brain
14	chr2:128146600-128155400	Weak transcription	Placenta	Placenta
15	chr2:128146600-128155400	Weak transcription	Spleen	Spleen
16	chr2:128146600-128155600	Weak transcription	Brain Anterior Caudate	brain
17	chr2:128146600-128155600	Weak transcription	Colonic Mucosa	Colon
18	chr2:128146600-128157200	Weak transcription	Fetal Stomach	stomach
19	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr2:128146800-128158200	Weak transcription	Small Intestine	intestine
21	chr2:128147000-128155000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr2:128148000-128154000	Weak transcription	Primary T cells from cord blood	blood
23	chr2:128148600-128155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:128148600-128155200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:128148800-128152000	Weak transcription	Liver	Liver
26	chr2:128148800-128155200	Weak transcription	GM12878-XiMat	blood
27	chr2:128148800-128155400	Weak transcription	HepG2	liver
28	chr2:128149000-128155200	Weak transcription	Fetal Intestine Large	intestine
29	chr2:128150200-128155400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:128150400-128155200	Weak transcription	HSMM	muscle
31	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:128150600-128155200	Weak transcription	HSMMtube	muscle
33	chr2:128150600-128155400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:128150600-128158200	Weak transcription	Fetal Thymus	thymus
35	chr2:128150800-128152200	Strong transcription	Fetal Muscle Leg	muscle
36	chr2:128150800-128155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:128150800-128155400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr2:128151000-128152000	Weak transcription	Aorta	Aorta
39	chr2:128151000-128152000	Weak transcription	Thymus	Thymus
40	chr2:128151000-128155000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr2:128151000-128155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:128151000-128155200	Weak transcription	Hela-S3	cervix
43	chr2:128151000-128155400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:128151000-128155400	Weak transcription	HMEC	breast
45	chr2:128151000-128155400	Weak transcription	Osteobl	bone
46	chr2:128151200-128152400	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr2:128151200-128152600	ZNF genes & repeats	A549	lung
48	chr2:128151200-128155200	Weak transcription	K562	blood
49	chr2:128151800-128152000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
50	chr2:128151800-128152200	Weak transcription	Primary monocytes fromperipheralblood	blood

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