Variant report

Variant	rs72863682
Chromosome Location	chr11:17337421-17337422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17336064..17337683-chr11:17338247..17340454,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16933946	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34563660	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60838059	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72863680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863690	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863699	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863701	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865007	0.85[AMR][1000 genomes]
rs72865016	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836937	chr11:17291499-17339127	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1799284	chr11:17299390-17343486	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1799280	chr11:17299390-17354775	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv1801731	chr11:17299390-17354775	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv897017	chr11:17318236-17343486	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841973	chr11:17327038-17339127	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1851915	chr11:17327038-17343486	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17299000-17357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:17299000-17357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:17299000-17360600	Weak transcription	Small Intestine	intestine
4	chr11:17299200-17357000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:17299400-17338200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:17299400-17355400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:17299400-17357000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:17301600-17350400	Weak transcription	Fetal Heart	heart
9	chr11:17306200-17353000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:17308200-17353600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:17308200-17357600	Weak transcription	HepG2	liver
12	chr11:17308200-17360800	Strong transcription	Fetal Thymus	thymus
13	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:17308400-17356800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:17308400-17361600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:17309000-17355600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:17312200-17355400	Weak transcription	Fetal Kidney	kidney
18	chr11:17314200-17353400	Weak transcription	Stomach Mucosa	stomach
19	chr11:17315400-17353400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:17316000-17360000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:17316000-17361000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:17316400-17347600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:17316600-17349800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:17318400-17355600	Weak transcription	Gastric	stomach
25	chr11:17318600-17350400	Weak transcription	Right Ventricle	heart
26	chr11:17318600-17353600	Weak transcription	Brain Anterior Caudate	brain
27	chr11:17319000-17356400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:17320200-17349800	Weak transcription	Esophagus	oesophagus
29	chr11:17320600-17349800	Weak transcription	Fetal Intestine Small	intestine
30	chr11:17320800-17372400	Weak transcription	GM12878-XiMat	blood
31	chr11:17322600-17356200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:17323000-17341000	Strong transcription	Placenta	Placenta
33	chr11:17323200-17339600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:17323400-17339200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:17324200-17353600	Weak transcription	Aorta	Aorta
36	chr11:17326400-17358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:17327600-17353800	Weak transcription	Ovary	ovary
38	chr11:17328200-17349800	Weak transcription	Pancreas	Pancrea
39	chr11:17328800-17349800	Weak transcription	Lung	lung
40	chr11:17329600-17341400	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:17330200-17358000	Weak transcription	K562	blood
42	chr11:17331600-17339000	Strong transcription	Liver	Liver
43	chr11:17331800-17357400	Weak transcription	Brain Hippocampus Middle	brain
44	chr11:17331800-17362000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:17333000-17337800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:17333000-17349000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:17334000-17371000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:17335000-17340400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:17335000-17341800	Strong transcription	Primary hematopoietic stem cells	blood
50	chr11:17335400-17355600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links