Variant report

Variant	rs72863701
Chromosome Location	chr11:17365670-17365671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17364435..17367703-chr11:17371860..17377637,6	K562	blood:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16933946	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34563660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60838059	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72863680	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863682	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863686	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863690	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865007	0.95[AMR][1000 genomes]
rs72865016	0.95[AMR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:17320800-17372400	Weak transcription	GM12878-XiMat	blood
3	chr11:17334000-17371000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:17336200-17372600	Weak transcription	HUVEC	blood vessel
5	chr11:17352400-17365800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:17354200-17369200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:17354400-17373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:17354600-17372400	Weak transcription	Liver	Liver
9	chr11:17356000-17367600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:17356000-17371000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:17356000-17372200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:17356000-17372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:17356000-17372600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:17356000-17372600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:17356000-17372800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr11:17356000-17372800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:17356200-17372400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr11:17356200-17372400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:17356200-17372400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:17356200-17372600	Weak transcription	Adipose Nuclei	Adipose
21	chr11:17356200-17372800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:17356200-17372800	Weak transcription	Aorta	Aorta
23	chr11:17356200-17372800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:17356200-17372800	Weak transcription	Ovary	ovary
25	chr11:17356200-17373000	Weak transcription	Left Ventricle	heart
26	chr11:17356400-17373000	Weak transcription	Esophagus	oesophagus
27	chr11:17359000-17372400	Weak transcription	Brain Germinal Matrix	brain
28	chr11:17359200-17372200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:17360800-17370600	Weak transcription	Thymus	Thymus
30	chr11:17364800-17366000	Enhancers	NHDF-Ad	bronchial
31	chr11:17364800-17366200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:17364800-17368200	Strong transcription	Fetal Thymus	thymus
33	chr11:17364800-17368800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:17364800-17371600	Strong transcription	Dnd41	blood
35	chr11:17365000-17366000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:17365000-17366200	Enhancers	NHEK	skin
37	chr11:17365000-17366600	Strong transcription	Primary T cells from cord blood	blood
38	chr11:17365200-17366000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr11:17365400-17365800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:17365400-17365800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:17365400-17365800	Enhancers	NH-A	brain
42	chr11:17365400-17366000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr11:17365400-17366000	Enhancers	HMEC	breast
44	chr11:17365400-17366200	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr11:17365400-17366400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:17365400-17366600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:17365400-17368000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:17365400-17372600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:17365600-17365800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:17365600-17366000	Enhancers	NHLF	lung

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