Variant report

Variant	rs72864087
Chromosome Location	chr11:16912756-16912757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10832696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832697	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024053	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024065	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024075	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601588	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12708338	0.91[EUR][1000 genomes]
rs2058160	0.92[EUR][1000 genomes]
rs35865759	0.87[EUR][1000 genomes]
rs59258722	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123174	0.83[EUR][1000 genomes]
rs72864081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865706	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931313	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
2	chr11:16905200-16913600	Weak transcription	Gastric	stomach
3	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
4	chr11:16910000-16913600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:16910000-16917800	Weak transcription	Lung	lung
6	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
7	chr11:16911600-16913000	Enhancers	Fetal Heart	heart
8	chr11:16911600-16914800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:16912200-16914400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:16912200-16923600	Weak transcription	A549	lung
11	chr11:16912400-16914000	Enhancers	Placenta	Placenta
12	chr11:16912400-16919400	Weak transcription	Liver	Liver
13	chr11:16912600-16913400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:16912600-16914200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:16912600-16915600	Enhancers	NHDF-Ad	bronchial
16	chr11:16912600-16915800	Enhancers	HMEC	breast
17	chr11:16912600-16916000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:16912600-16916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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