Variant report

Variant	rs72865036
Chromosome Location	chr11:17391084-17391085
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17386801..17391541-chr11:17392806..17398479,7	K562	blood:
2	chr11:17372004..17376706-chr11:17389916..17393602,5	K562	blood:
3	chr11:17373389..17376552-chr11:17389035..17393180,4	K562	blood:
4	chr11:17389738..17391541-chr11:17394315..17396637,3	K562	blood:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11827039	1.00[ASN][1000 genomes]
rs11828705	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292288	1.00[ASN][1000 genomes]
rs12293803	1.00[ASN][1000 genomes]
rs12422139	1.00[ASN][1000 genomes]
rs17846719	1.00[ASN][1000 genomes]
rs17846760	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17846764	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17846770	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2214285	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55898520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56003324	1.00[ASN][1000 genomes]
rs56261601	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56731620	1.00[ASN][1000 genomes]
rs6486364	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486365	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865007	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865016	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865050	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865058	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865072	0.83[EUR][1000 genomes]
rs72866820	1.00[ASN][1000 genomes]
rs757111	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7927686	1.00[ASN][1000 genomes]
rs7937774	1.00[ASN][1000 genomes]
rs8192691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17376600-17391400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:17382400-17401200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:17387200-17398600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:17387600-17393200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:17387800-17391200	Strong transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:17388000-17391200	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr11:17388200-17391600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:17388200-17395200	ZNF genes & repeats	Thymus	Thymus
9	chr11:17388200-17395800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:17388200-17396800	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr11:17388400-17391600	Strong transcription	Gastric	stomach
12	chr11:17388400-17391800	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:17388600-17391800	Strong transcription	Colon Smooth Muscle	Colon
14	chr11:17388600-17396000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr11:17388600-17396800	ZNF genes & repeats	Dnd41	blood
16	chr11:17388800-17392000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
17	chr11:17388800-17392400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:17388800-17394200	ZNF genes & repeats	HepG2	liver
19	chr11:17388800-17395200	ZNF genes & repeats	Spleen	Spleen
20	chr11:17388800-17395600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
21	chr11:17388800-17395800	ZNF genes & repeats	HSMM	muscle
22	chr11:17388800-17395800	ZNF genes & repeats	NHEK	skin
23	chr11:17388800-17396000	ZNF genes & repeats	Adipose Nuclei	Adipose
24	chr11:17389000-17392400	ZNF genes & repeats	Pancreas	Pancrea
25	chr11:17389000-17392600	Strong transcription	Brain Angular Gyrus	brain
26	chr11:17389000-17395800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr11:17389000-17398200	ZNF genes & repeats	Ovary	ovary
28	chr11:17389200-17391200	Weak transcription	Psoas Muscle	Psoas
29	chr11:17389400-17391200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:17389400-17391400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:17389400-17391400	Strong transcription	Hela-S3	cervix
32	chr11:17389600-17392400	ZNF genes & repeats	Esophagus	oesophagus
33	chr11:17389600-17392400	ZNF genes & repeats	Lung	lung
34	chr11:17389600-17392600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:17389600-17395200	ZNF genes & repeats	Colonic Mucosa	Colon
36	chr11:17389600-17395400	ZNF genes & repeats	HSMMtube	muscle
37	chr11:17389600-17395800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
38	chr11:17389600-17396000	ZNF genes & repeats	Fetal Brain Female	brain
39	chr11:17389800-17392200	ZNF genes & repeats	Fetal Thymus	thymus
40	chr11:17389800-17394200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
41	chr11:17389800-17394800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:17389800-17394800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
43	chr11:17389800-17395000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:17389800-17395200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:17389800-17395200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:17389800-17395200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
47	chr11:17389800-17395600	ZNF genes & repeats	Aorta	Aorta
48	chr11:17389800-17395800	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr11:17389800-17397000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:17390000-17391600	Weak transcription	Fetal Stomach	stomach

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