Variant report

Variant	rs72868861
Chromosome Location	chr4:87404386-87404387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87372099..87374622-chr4:87404091..87405655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109339	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59285334	1.00[AFR][1000 genomes]
rs72868848	1.00[AFR][1000 genomes]
rs72868852	1.00[AFR][1000 genomes]
rs72868855	1.00[AFR][1000 genomes]
rs72868865	1.00[AFR][1000 genomes]
rs72868868	1.00[AFR][1000 genomes]
rs72868878	1.00[AFR][1000 genomes]
rs72868880	1.00[AFR][1000 genomes]
rs72868881	1.00[AFR][1000 genomes]
rs72868883	1.00[AFR][1000 genomes]
rs72868884	1.00[AFR][1000 genomes]
rs72870619	1.00[AFR][1000 genomes]
rs72870634	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87394200-87405600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:87400800-87406800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:87401400-87405800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:87402200-87405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:87402400-87404800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr4:87402600-87404800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:87403400-87404400	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr4:87403400-87404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:87403400-87407200	Enhancers	Dnd41	blood
10	chr4:87403600-87404600	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr4:87403600-87405000	Enhancers	Fetal Kidney	kidney
12	chr4:87403600-87406200	Enhancers	Fetal Thymus	thymus
13	chr4:87403800-87404400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:87403800-87404400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr4:87403800-87404600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:87403800-87405800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:87404000-87404400	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr4:87404000-87404400	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr4:87404000-87404400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:87404000-87404400	Enhancers	Brain Cingulate Gyrus	brain
21	chr4:87404000-87404400	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr4:87404000-87404400	Enhancers	Fetal Muscle Leg	muscle
23	chr4:87404000-87404400	Active TSS	Stomach Smooth Muscle	stomach
24	chr4:87404000-87404400	Enhancers	NHEK	skin
25	chr4:87404000-87404400	Flanking Active TSS	Osteobl	bone
26	chr4:87404000-87404600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:87404000-87404600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:87404000-87404600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:87404000-87404600	Active TSS	Brain Anterior Caudate	brain
30	chr4:87404000-87404600	Active TSS	Brain Substantia Nigra	brain
31	chr4:87404000-87404600	Flanking Active TSS	Fetal Lung	lung
32	chr4:87404000-87404800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:87404000-87405600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr4:87404000-87406800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr4:87404200-87404400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:87404200-87404400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr4:87404200-87404400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr4:87404200-87404400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:87404200-87404400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:87404200-87404400	Flanking Active TSS	NH-A	brain
41	chr4:87404200-87404400	Enhancers	NHDF-Ad	bronchial
42	chr4:87404200-87404600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:87404200-87404600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr4:87404200-87404600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:87404200-87404600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:87404200-87404600	Active TSS	Brain Angular Gyrus	brain
47	chr4:87404200-87404600	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr4:87404200-87404600	Active TSS	Fetal Brain Female	brain
49	chr4:87404200-87404600	Weak transcription	Fetal Stomach	stomach
50	chr4:87404200-87404800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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