Variant report

Variant	rs72868865
Chromosome Location	chr4:87413585-87413586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59285334	1.00[AFR][1000 genomes]
rs72868848	1.00[AFR][1000 genomes]
rs72868852	1.00[AFR][1000 genomes]
rs72868855	1.00[AFR][1000 genomes]
rs72868861	1.00[AFR][1000 genomes]
rs72868868	1.00[AFR][1000 genomes]
rs72868878	1.00[AFR][1000 genomes]
rs72868880	1.00[AFR][1000 genomes]
rs72868881	1.00[AFR][1000 genomes]
rs72868883	1.00[AFR][1000 genomes]
rs72868884	1.00[AFR][1000 genomes]
rs72870619	1.00[AFR][1000 genomes]
rs72870634	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87404600-87414800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:87405000-87418400	Weak transcription	Fetal Kidney	kidney
3	chr4:87405800-87413600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:87405800-87414600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:87406800-87414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:87407000-87417000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:87407600-87422600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:87408400-87414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:87409400-87418400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:87411800-87417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:87412400-87414000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:87412400-87415000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:87412600-87418400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:87413000-87417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:87413400-87413600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:87413400-87413600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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