Variant report

Variant	rs72868883
Chromosome Location	chr4:87477186-87477187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59285334	1.00[AFR][1000 genomes]
rs72868848	1.00[AFR][1000 genomes]
rs72868852	1.00[AFR][1000 genomes]
rs72868855	1.00[AFR][1000 genomes]
rs72868861	1.00[AFR][1000 genomes]
rs72868865	1.00[AFR][1000 genomes]
rs72868868	1.00[AFR][1000 genomes]
rs72868878	1.00[AFR][1000 genomes]
rs72868880	1.00[AFR][1000 genomes]
rs72868881	1.00[AFR][1000 genomes]
rs72868884	1.00[AFR][1000 genomes]
rs72870619	1.00[AFR][1000 genomes]
rs72870634	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1012836	chr4:87279206-87643558	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757071	chr4:87417291-87689533	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759264	chr4:87417291-87689533	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
8	nsv879522	chr4:87473776-87644842	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87462600-87478000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:87466200-87478200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:87466600-87479400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:87471200-87478000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:87474000-87477800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:87474400-87479200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:87474600-87479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:87474800-87478000	Weak transcription	HMEC	breast
9	chr4:87475000-87477200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:87475000-87478000	Weak transcription	NHEK	skin
11	chr4:87475400-87478000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:87475400-87478200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr4:87476000-87477600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:87476200-87477600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:87476200-87477800	Weak transcription	Osteobl	bone
16	chr4:87476400-87477800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:87476400-87478000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:87476400-87478000	Weak transcription	GM12878-XiMat	blood
19	chr4:87476600-87477600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:87476600-87478000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:87476800-87478000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:87477000-87477800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr4:87477000-87479000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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