Variant report

Variant	rs72869057
Chromosome Location	chr4:80153579-80153580
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17441599	0.85[AFR][1000 genomes]
rs58384464	1.00[AFR][1000 genomes]
rs58914185	1.00[AFR][1000 genomes]
rs59342806	1.00[AFR][1000 genomes]
rs59735955	0.85[AFR][1000 genomes]
rs72869043	1.00[AFR][1000 genomes]
rs72869051	1.00[AFR][1000 genomes]
rs72869067	1.00[AFR][1000 genomes]
rs72870805	1.00[AFR][1000 genomes]
rs72870831	1.00[AFR][1000 genomes]
rs72870849	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80149800-80153600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:80151600-80154200	Enhancers	K562	blood
3	chr4:80152200-80153600	Weak transcription	Fetal Lung	lung
4	chr4:80153200-80154200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:80153200-80154400	Enhancers	HSMM	muscle
6	chr4:80153400-80154200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:80153400-80154400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:80153400-80156400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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