Variant report

Variant	rs72870840
Chromosome Location	chr11:17070777-17070778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11024132	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11600230	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11603461	1.00[ASN][1000 genomes]
rs11604470	1.00[ASN][1000 genomes]
rs11604561	1.00[ASN][1000 genomes]
rs11605779	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827341	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12417522	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418260	1.00[ASN][1000 genomes]
rs12419179	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1544609	1.00[ASN][1000 genomes]
rs28845191	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35297605	1.00[ASN][1000 genomes]
rs55763300	1.00[ASN][1000 genomes]
rs55928651	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56254605	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57726107	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59007596	0.86[ASN][1000 genomes]
rs59075718	1.00[ASN][1000 genomes]
rs61762011	1.00[ASN][1000 genomes]
rs61879669	1.00[ASN][1000 genomes]
rs61879670	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879673	1.00[ASN][1000 genomes]
rs61879686	1.00[ASN][1000 genomes]
rs61879698	1.00[ASN][1000 genomes]
rs61879699	1.00[ASN][1000 genomes]
rs61879703	1.00[ASN][1000 genomes]
rs61879714	1.00[ASN][1000 genomes]
rs61879715	1.00[ASN][1000 genomes]
rs61879721	1.00[ASN][1000 genomes]
rs61879731	1.00[ASN][1000 genomes]
rs61881312	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869096	1.00[ASN][1000 genomes]
rs72870837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7481457	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv971988	chr11:17068362-17084978	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17067400-17071000	Enhancers	Fetal Intestine Large	intestine
2	chr11:17067600-17071000	Enhancers	HepG2	liver
3	chr11:17069400-17096200	Weak transcription	Pancreas	Pancrea
4	chr11:17069800-17071000	Enhancers	A549	lung
5	chr11:17070600-17088400	Weak transcription	Fetal Intestine Small	intestine

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