Variant report

Variant	rs72874070
Chromosome Location	chr4:81427958-81427959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10033938	0.89[AMR][1000 genomes]
rs1038530	0.82[AMR][1000 genomes]
rs11725262	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11732907	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11940084	0.85[AMR][1000 genomes]
rs12650380	0.82[AMR][1000 genomes]
rs1352077	0.82[AMR][1000 genomes]
rs1486021	0.82[AMR][1000 genomes]
rs1486027	0.82[AMR][1000 genomes]
rs1486030	0.82[AMR][1000 genomes]
rs1601512	0.89[AMR][1000 genomes]
rs1601513	0.89[AMR][1000 genomes]
rs17004933	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2132264	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2867780	0.82[AMR][1000 genomes]
rs2867782	0.82[AMR][1000 genomes]
rs34306570	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34975597	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4146323	0.82[AMR][1000 genomes]
rs4283653	0.89[AMR][1000 genomes]
rs4693062	0.82[AMR][1000 genomes]
rs4693510	0.82[AMR][1000 genomes]
rs4693531	0.82[AMR][1000 genomes]
rs59789768	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6535031	0.82[AMR][1000 genomes]
rs6535040	0.89[AMR][1000 genomes]
rs6535041	0.89[AMR][1000 genomes]
rs72874049	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874077	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874083	0.82[EUR][1000 genomes]
rs72874087	0.86[AFR][1000 genomes]
rs72874089	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874098	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7696162	0.82[AMR][1000 genomes]
rs923178	0.82[AMR][1000 genomes]
rs971728	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81417600-81428800	Weak transcription	NHDF-Ad	bronchial
2	chr4:81422400-81429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:81423200-81428800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:81424000-81429800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:81424200-81429800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:81424200-81430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:81424600-81428200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:81427400-81428000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr4:81427600-81428800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:81427600-81431000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:81427800-81428600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:81427800-81429200	Enhancers	Primary T helper cells PMA-I stimulated	--

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