Variant report

Variant	rs72874077
Chromosome Location	chr4:81429582-81429583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:81429186..81431179-chr4:81432329..81435237,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10033938	0.92[AMR][1000 genomes]
rs1038530	0.85[AMR][1000 genomes]
rs1038531	0.81[AMR][1000 genomes]
rs11725262	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11732907	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11940084	0.89[AMR][1000 genomes]
rs12650380	0.85[AMR][1000 genomes]
rs1352077	0.85[AMR][1000 genomes]
rs1486021	0.85[AMR][1000 genomes]
rs1486027	0.85[AMR][1000 genomes]
rs1486030	0.85[AMR][1000 genomes]
rs1601512	0.92[AMR][1000 genomes]
rs1601513	0.92[AMR][1000 genomes]
rs17004933	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2132264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2867780	0.85[AMR][1000 genomes]
rs2867782	0.85[AMR][1000 genomes]
rs34306570	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34975597	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4146323	0.85[AMR][1000 genomes]
rs4283653	0.92[AMR][1000 genomes]
rs4693062	0.85[AMR][1000 genomes]
rs4693510	0.85[AMR][1000 genomes]
rs4693531	0.85[AMR][1000 genomes]
rs59789768	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6535031	0.85[AMR][1000 genomes]
rs6535040	0.92[AMR][1000 genomes]
rs6535041	0.92[AMR][1000 genomes]
rs72874049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72874070	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874083	0.82[EUR][1000 genomes]
rs72874087	0.82[AFR][1000 genomes]
rs72874089	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874098	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7696162	0.85[AMR][1000 genomes]
rs923178	0.85[AMR][1000 genomes]
rs971728	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81422400-81429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:81424000-81429800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:81424200-81429800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:81424200-81430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:81427600-81431000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:81428000-81429800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:81428600-81429800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:81428600-81430000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:81428800-81429800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:81429000-81430000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:81429200-81429600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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