Variant report

Variant	rs72874275
Chromosome Location	chr4:87737333-87737334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006546	1.00[AFR][1000 genomes]
rs10009590	1.00[AFR][1000 genomes]
rs10013483	0.89[AFR][1000 genomes]
rs10032048	1.00[AFR][1000 genomes]
rs10034609	1.00[AFR][1000 genomes]
rs28404766	0.89[AFR][1000 genomes]
rs28452829	1.00[AFR][1000 genomes]
rs28465411	0.89[AFR][1000 genomes]
rs28470706	0.89[AFR][1000 genomes]
rs28676725	0.84[AFR][1000 genomes]
rs28718854	0.89[AFR][1000 genomes]
rs28798516	0.89[AFR][1000 genomes]
rs34226837	0.97[AFR][1000 genomes]
rs72874281	1.00[AFR][1000 genomes]
rs9992507	0.89[AFR][1000 genomes]
rs9994616	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87635200-87737400	Weak transcription	Fetal Brain Male	brain
2	chr4:87639400-87739200	Weak transcription	A549	lung
3	chr4:87661600-87737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:87689400-87738200	Weak transcription	Gastric	stomach
5	chr4:87690000-87738800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:87698600-87738600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:87712600-87737600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:87712600-87738400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:87712600-87751400	Weak transcription	Aorta	Aorta
10	chr4:87712800-87739600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:87715800-87737400	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:87719200-87738600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:87719400-87738000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:87724600-87737600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:87725800-87739200	Weak transcription	Hela-S3	cervix
16	chr4:87728600-87737800	Strong transcription	HMEC	breast
17	chr4:87729600-87738200	Weak transcription	Small Intestine	intestine
18	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
19	chr4:87732200-87737600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
21	chr4:87732600-87737400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:87734000-87737600	Weak transcription	Lung	lung
23	chr4:87734200-87738400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:87735600-87737400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr4:87735600-87737600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:87735600-87737600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr4:87735600-87737600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr4:87735600-87737600	Strong transcription	Fetal Kidney	kidney
29	chr4:87735600-87740400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:87735800-87737400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:87735800-87737400	Strong transcription	Brain Anterior Caudate	brain
32	chr4:87736000-87737600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:87736200-87737400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:87736200-87737400	Strong transcription	Brain Cingulate Gyrus	brain
35	chr4:87736200-87737400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
36	chr4:87736200-87737400	ZNF genes & repeats	NHEK	skin
37	chr4:87736200-87737400	ZNF genes & repeats	NHLF	lung
38	chr4:87736200-87737600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
39	chr4:87736400-87737400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:87736400-87737400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:87736400-87737400	ZNF genes & repeats	Left Ventricle	heart
42	chr4:87736400-87737600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr4:87736400-87737600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
44	chr4:87736400-87738000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:87736400-87738600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr4:87736600-87737400	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr4:87736600-87737400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
48	chr4:87736800-87737400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
49	chr4:87736800-87737600	Strong transcription	Esophagus	oesophagus
50	chr4:87737000-87737400	Genic enhancers	Fetal Lung	lung

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