Variant report

Variant	rs72874281
Chromosome Location	chr4:87746477-87746478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87742346..87743864-chr4:87744920..87747227,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006546	1.00[AFR][1000 genomes]
rs10009590	1.00[AFR][1000 genomes]
rs10013483	0.89[AFR][1000 genomes]
rs10032048	1.00[AFR][1000 genomes]
rs10034609	1.00[AFR][1000 genomes]
rs28404766	0.89[AFR][1000 genomes]
rs28452829	1.00[AFR][1000 genomes]
rs28465411	0.89[AFR][1000 genomes]
rs28470706	0.89[AFR][1000 genomes]
rs28676725	0.84[AFR][1000 genomes]
rs28718854	0.89[AFR][1000 genomes]
rs28798516	0.89[AFR][1000 genomes]
rs34226837	0.97[AFR][1000 genomes]
rs72874275	1.00[AFR][1000 genomes]
rs9992507	0.89[AFR][1000 genomes]
rs9994616	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830001	chr4:87585278-87748643	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87712600-87751400	Weak transcription	Aorta	Aorta
2	chr4:87731200-87756000	Weak transcription	Pancreas	Pancrea
3	chr4:87732400-87760000	Weak transcription	Psoas Muscle	Psoas
4	chr4:87737600-87746600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:87737600-87752600	Weak transcription	Esophagus	oesophagus
6	chr4:87737800-87754800	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:87738200-87746800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:87738200-87752000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:87739800-87757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:87740200-87755200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:87740400-87752000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:87741200-87752200	Weak transcription	Fetal Lung	lung
13	chr4:87743200-87746800	Strong transcription	Adipose Nuclei	Adipose
14	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
15	chr4:87743600-87746600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:87745000-87746800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:87745400-87757400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:87745800-87748600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:87746200-87747000	Strong transcription	Left Ventricle	heart
20	chr4:87746400-87746800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:87746400-87747400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:87746400-87747400	Genic enhancers	NHEK	skin

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