Variant report

Variant	rs72874293
Chromosome Location	chr4:87764384-87764385
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13106574	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13149938	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17012114	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17012130	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28495376	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28574613	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28682481	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34881728	0.91[EUR][1000 genomes]
rs35392566	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4639036	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58866123	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62305606	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87743200-87769400	Weak transcription	Right Ventricle	heart
2	chr4:87752600-87764400	Weak transcription	Adipose Nuclei	Adipose
3	chr4:87753000-87765600	Weak transcription	Esophagus	oesophagus
4	chr4:87753000-87766800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:87757200-87769200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:87759000-87768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:87760600-87765000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:87760600-87767600	Enhancers	HMEC	breast
9	chr4:87761400-87764800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:87762600-87768200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:87762800-87768200	Weak transcription	NHDF-Ad	bronchial
12	chr4:87763600-87766200	Genic enhancers	NHEK	skin
13	chr4:87763600-87769400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:87763800-87766200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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