Variant report

Variant	rs72880575
Chromosome Location	chr18:24616297-24616298
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12326934	0.85[EUR][1000 genomes]
rs16943181	0.97[EUR][1000 genomes]
rs28433105	0.97[EUR][1000 genomes]
rs3889350	0.85[EUR][1000 genomes]
rs56403102	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58569620	0.85[EUR][1000 genomes]
rs60167332	0.85[EUR][1000 genomes]
rs61089873	0.97[EUR][1000 genomes]
rs61998173	0.97[EUR][1000 genomes]
rs6508460	0.85[EUR][1000 genomes]
rs6508461	0.85[EUR][1000 genomes]
rs6508463	0.97[EUR][1000 genomes]
rs67822335	0.85[EUR][1000 genomes]
rs7227120	0.97[EUR][1000 genomes]
rs7237212	0.97[EUR][1000 genomes]
rs7238255	0.97[EUR][1000 genomes]
rs8085829	0.85[EUR][1000 genomes]
rs8086337	0.85[EUR][1000 genomes]
rs8091201	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24613400-24620400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24614000-24631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:24614200-24624600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:24614600-24631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links