Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64205222..64208212-chr6:64281813..64283896,3	MCF-7	breast:
2	chr6:64204658..64208127-chr6:64280542..64283611,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11752355	0.85[ASN][1000 genomes]
rs11756680	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1570313	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923521	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1923522	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28396397	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28635226	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3857527	0.87[EUR][1000 genomes]
rs56950873	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57519486	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57899418	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58779953	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61580957	0.87[EUR][1000 genomes]
rs66500769	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67094823	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72880852	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72880876	0.81[ASN][1000 genomes]
rs72880879	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72880884	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7767556	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970135	chr6:64200126-64215926	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64201400-64207200	Enhancers	Hela-S3	cervix
2	chr6:64203000-64206000	Weak transcription	HepG2	liver
3	chr6:64203000-64207600	Weak transcription	Stomach Mucosa	stomach
4	chr6:64203200-64207200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:64203200-64209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:64203600-64205400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:64203600-64206800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:64203800-64205800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:64203800-64206200	Weak transcription	A549	lung
10	chr6:64205200-64207000	Enhancers	Fetal Intestine Large	intestine

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