Variant report

Variant	rs72880852
Chromosome Location	chr6:64222422-64222423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTP4A1-2	chr6:64222146-64223644	NONHSAT113348

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1062193	0.82[ASN][1000 genomes]
rs11752355	0.80[ASN][1000 genomes]
rs11756680	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1570313	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681967	0.82[ASN][1000 genomes]
rs16879705	0.82[ASN][1000 genomes]
rs16894454	0.82[ASN][1000 genomes]
rs16894460	0.82[ASN][1000 genomes]
rs1744156	0.82[ASN][1000 genomes]
rs1744163	0.82[ASN][1000 genomes]
rs1923521	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1923522	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2075656	0.82[ASN][1000 genomes]
rs2622310	0.84[ASN][1000 genomes]
rs2622313	0.82[ASN][1000 genomes]
rs28396397	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28635226	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3800494	0.82[ASN][1000 genomes]
rs3857527	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56950873	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57519486	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57899418	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58779953	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61580957	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66500769	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66984720	0.82[ASN][1000 genomes]
rs67094823	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67125777	0.82[ASN][1000 genomes]
rs67260200	0.82[ASN][1000 genomes]
rs67549604	0.82[ASN][1000 genomes]
rs6936079	0.82[ASN][1000 genomes]
rs72880815	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72880876	0.85[ASN][1000 genomes]
rs72880879	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72880884	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7767556	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970333	chr6:64215926-64234330	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64220000-64224200	Enhancers	HepG2	liver
2	chr6:64220200-64222600	Weak transcription	Fetal Lung	lung
3	chr6:64220200-64224000	Enhancers	A549	lung
4	chr6:64220200-64229200	Weak transcription	NHEK	skin
5	chr6:64220400-64224000	Weak transcription	Hela-S3	cervix
6	chr6:64220400-64224800	Enhancers	Liver	Liver
7	chr6:64220600-64227600	Weak transcription	GM12878-XiMat	blood
8	chr6:64221000-64224200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:64221000-64224600	Weak transcription	Pancreas	Pancrea
10	chr6:64221000-64226200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:64221200-64224000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:64221200-64226200	Weak transcription	Stomach Mucosa	stomach
13	chr6:64221600-64223600	Weak transcription	Fetal Intestine Large	intestine

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