Variant report

Variant	rs72880874
Chromosome Location	chr6:64239720-64239721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64234904..64241405-chr6:64279564..64285170,9	MCF-7	breast:
2	chr6:64232325..64242084-chr6:64281113..64285530,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

rs_ID	r²[population]
rs55839786	1.00[AMR][1000 genomes]
rs56331162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880871	1.00[EUR][1000 genomes]
rs72884629	1.00[AMR][1000 genomes]
rs72884652	1.00[AMR][1000 genomes]
rs72884655	1.00[AMR][1000 genomes]
rs72884665	1.00[AMR][1000 genomes]
rs72884679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886338	1.00[AMR][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64237000-64240600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:64237600-64240400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:64238400-64240200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:64238400-64241000	Genic enhancers	HepG2	liver
5	chr6:64239000-64240200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:64239200-64239800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:64239200-64239800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:64239200-64239800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:64239200-64239800	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr6:64239200-64240000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr6:64239200-64240200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:64239200-64240200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:64239200-64240200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr6:64239200-64240400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr6:64239200-64240400	Flanking Active TSS	A549	lung
16	chr6:64239200-64240400	Flanking Active TSS	NHEK	skin
17	chr6:64239200-64240600	Flanking Active TSS	Hela-S3	cervix
18	chr6:64239400-64239800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:64239400-64239800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:64239400-64239800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:64239400-64239800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:64239400-64239800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:64239400-64239800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:64239400-64239800	Flanking Active TSS	GM12878-XiMat	blood
25	chr6:64239400-64239800	Flanking Active TSS	HMEC	breast
26	chr6:64239400-64239800	Enhancers	NHLF	lung
27	chr6:64239400-64239800	Enhancers	Osteobl	bone
28	chr6:64239400-64240200	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr6:64239400-64240400	Enhancers	Liver	Liver
30	chr6:64239600-64239800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:64239600-64239800	Enhancers	Small Intestine	intestine

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