Variant report

Variant	rs72880876
Chromosome Location	chr6:64241021-64241022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64234904..64241405-chr6:64279564..64285170,9	MCF-7	breast:
2	chr6:64232325..64242084-chr6:64281113..64285530,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1062193	0.96[ASN][1000 genomes]
rs11752355	0.83[EUR][1000 genomes]
rs11755111	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756680	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11757655	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11759362	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1197892	0.92[ASN][1000 genomes]
rs1210839	0.92[ASN][1000 genomes]
rs1570313	0.81[ASN][1000 genomes]
rs1681953	0.89[ASN][1000 genomes]
rs1681967	0.96[ASN][1000 genomes]
rs16879705	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894454	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16894460	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16894480	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16894493	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1744156	0.96[ASN][1000 genomes]
rs1744163	0.96[ASN][1000 genomes]
rs1872288	0.89[ASN][1000 genomes]
rs1905595	0.87[ASN][1000 genomes]
rs1923521	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1923522	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2075656	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2622310	0.99[ASN][1000 genomes]
rs2622313	0.96[ASN][1000 genomes]
rs28396397	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28635226	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2881842	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35468218	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35811627	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800494	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3857527	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4710434	0.94[ASN][1000 genomes]
rs56950873	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56977573	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57258726	0.85[ASN][1000 genomes]
rs57519486	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57899418	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58016244	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58173616	0.89[ASN][1000 genomes]
rs58374599	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58779953	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59458355	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59589817	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60727297	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60863270	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61382532	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61426335	0.92[ASN][1000 genomes]
rs61580957	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6454298	0.89[ASN][1000 genomes]
rs66500769	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66508463	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66559225	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66618112	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66648865	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66683185	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66769846	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66924207	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66943356	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66984720	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67048845	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67118169	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67125777	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67260200	0.96[ASN][1000 genomes]
rs67549604	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67640372	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67805256	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67879075	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67885904	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6929720	0.92[ASN][1000 genomes]
rs6936079	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72880815	0.81[ASN][1000 genomes]
rs72880852	0.85[ASN][1000 genomes]
rs72880879	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72880884	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72882716	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72882748	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72882751	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7746492	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7766283	0.89[ASN][1000 genomes]
rs7766347	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767556	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9449520	0.92[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64239800-64241200	Enhancers	HMEC	breast
2	chr6:64239800-64243800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:64240400-64241200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:64240400-64245600	Weak transcription	Liver	Liver
5	chr6:64240400-64254000	Weak transcription	Psoas Muscle	Psoas
6	chr6:64240600-64242400	Enhancers	Hela-S3	cervix
7	chr6:64240600-64247000	Weak transcription	NHEK	skin
8	chr6:64241000-64241600	Enhancers	A549	lung
9	chr6:64241000-64245800	Strong transcription	HepG2	liver

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