Variant report

Variant	rs72881516
Chromosome Location	chr11:18245047-18245048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10766463	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10832904	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832908	0.80[AMR][1000 genomes]
rs11024553	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024562	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024563	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11024566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024574	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024576	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024577	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11024578	0.80[AMR][1000 genomes]
rs11601002	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12361253	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364058	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364776	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12791694	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1915391	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2168363	0.80[AMR][1000 genomes]
rs2445218	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4757627	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757628	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4757629	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4757630	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67006796	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67712345	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7103794	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7117484	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7117890	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7935726	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv428569	chr11:18194030-18350869	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv975156	chr11:18230807-18245674	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3440516	chr11:18242376-18246674	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18243400-18245800	Enhancers	HepG2	liver
2	chr11:18244600-18245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:18244600-18247000	Enhancers	Liver	Liver
4	chr11:18244800-18246400	Weak transcription	Spleen	Spleen
5	chr11:18245000-18246600	Weak transcription	Primary B cells from peripheral blood	blood

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