Variant report

Variant	rs72881552
Chromosome Location	chr2:37664206-37664207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13425396	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020676	0.89[EUR][1000 genomes]
rs17020693	0.89[EUR][1000 genomes]
rs17020696	0.89[EUR][1000 genomes]
rs4425058	1.00[ASN][1000 genomes]
rs57223658	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57954128	1.00[ASN][1000 genomes]
rs60003859	0.89[EUR][1000 genomes]
rs60205341	1.00[ASN][1000 genomes]
rs60374526	1.00[ASN][1000 genomes]
rs61022900	0.86[EUR][1000 genomes]
rs61356018	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61460713	1.00[ASN][1000 genomes]
rs6708554	0.86[EUR][1000 genomes]
rs6708931	0.86[EUR][1000 genomes]
rs6711805	0.89[EUR][1000 genomes]
rs6727245	0.89[EUR][1000 genomes]
rs6739990	0.89[EUR][1000 genomes]
rs6741256	0.86[EUR][1000 genomes]
rs6751874	0.89[EUR][1000 genomes]
rs6752214	0.89[EUR][1000 genomes]
rs6752559	0.86[EUR][1000 genomes]
rs6755472	0.89[EUR][1000 genomes]
rs6755835	0.89[EUR][1000 genomes]
rs6756253	0.89[EUR][1000 genomes]
rs72865105	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879949	0.86[EUR][1000 genomes]
rs72879952	0.89[EUR][1000 genomes]
rs72879959	0.89[EUR][1000 genomes]
rs72879966	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72879969	0.89[EUR][1000 genomes]
rs72879979	0.89[EUR][1000 genomes]
rs72879983	0.89[EUR][1000 genomes]
rs72881514	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881515	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881519	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881557	1.00[EUR][1000 genomes]
rs72881560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924621	1.00[ASN][1000 genomes]
rs73924622	1.00[ASN][1000 genomes]
rs73924623	1.00[ASN][1000 genomes]
rs7570240	1.00[ASN][1000 genomes]
rs7603115	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37663600-37664400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr2:37663600-37665600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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