Variant report

Variant	rs72881560
Chromosome Location	chr2:37667086-37667087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr2:37666967-37667178	HepG2	liver:	n/a	chr2:37667070-37667088
2	MAFK	chr2:37666929-37667207	HepG2	liver:	n/a	chr2:37667076-37667087 chr2:37667076-37667087
3	STAT3	chr2:37666977-37667176	MCF10A-Er-Src	breast:	n/a	n/a
4	MAFK	chr2:37666949-37667195	IMR90	lung:	n/a	chr2:37667076-37667087 chr2:37667076-37667087
5	CEBPB	chr2:37666923-37667126	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
RNU6-1116P	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs13425396	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17020676	0.89[EUR][1000 genomes]
rs17020693	0.89[EUR][1000 genomes]
rs17020696	0.89[EUR][1000 genomes]
rs4425058	1.00[ASN][1000 genomes]
rs57223658	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57954128	1.00[ASN][1000 genomes]
rs60003859	0.89[EUR][1000 genomes]
rs60205341	1.00[ASN][1000 genomes]
rs60374526	1.00[ASN][1000 genomes]
rs61022900	0.86[EUR][1000 genomes]
rs61356018	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61460713	1.00[ASN][1000 genomes]
rs6708554	0.86[EUR][1000 genomes]
rs6708931	0.86[EUR][1000 genomes]
rs6711805	0.89[EUR][1000 genomes]
rs6727245	0.89[EUR][1000 genomes]
rs6739990	0.89[EUR][1000 genomes]
rs6741256	0.86[EUR][1000 genomes]
rs6751874	0.89[EUR][1000 genomes]
rs6752214	0.89[EUR][1000 genomes]
rs6752559	0.86[EUR][1000 genomes]
rs6755472	0.89[EUR][1000 genomes]
rs6755835	0.89[EUR][1000 genomes]
rs6756253	0.89[EUR][1000 genomes]
rs72865105	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879949	0.86[EUR][1000 genomes]
rs72879952	0.89[EUR][1000 genomes]
rs72879959	0.89[EUR][1000 genomes]
rs72879966	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72879969	0.89[EUR][1000 genomes]
rs72879979	0.89[EUR][1000 genomes]
rs72879983	0.89[EUR][1000 genomes]
rs72881514	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881515	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881519	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881557	1.00[EUR][1000 genomes]
rs73924621	1.00[ASN][1000 genomes]
rs73924622	1.00[ASN][1000 genomes]
rs73924623	1.00[ASN][1000 genomes]
rs7570240	1.00[ASN][1000 genomes]
rs7603115	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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