Variant report

Variant	rs72884618
Chromosome Location	chr6:64348621-64348622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:64282113..64284496-chr6:64347940..64351410,3	MCF-7	breast:
2	chr6:64280920..64286126-chr6:64341540..64349518,16	K562	blood:
3	chr6:64347568..64349664-chr6:64406239..64409987,3	K562	blood:
4	chr6:64345547..64349156-chr6:64414533..64419389,4	K562	blood:
5	chr6:64348462..64350491-chr6:64377129..64380030,3	K562	blood:
6	chr6:64347337..64350491-chr6:64374830..64379357,4	K562	blood:
7	chr6:64281350..64286126-chr6:64342580..64350015,13	K562	blood:
8	chr6:64347461..64349165-chr6:64396342..64398673,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000266680	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000118482	Chromatin interaction

rs_ID	r²[population]
rs11753940	0.88[AMR][1000 genomes]
rs60289981	0.83[EUR][1000 genomes]
rs72886368	0.82[EUR][1000 genomes]

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64345400-64349400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:64346400-64349000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:64347000-64349600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:64347000-64349600	Weak transcription	Small Intestine	intestine
5	chr6:64347000-64351000	Weak transcription	Pancreas	Pancrea
6	chr6:64347000-64354800	Weak transcription	Lung	lung
7	chr6:64347000-64370600	Weak transcription	Left Ventricle	heart
8	chr6:64347000-64383200	Weak transcription	Esophagus	oesophagus
9	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:64347200-64348800	Weak transcription	Stomach Mucosa	stomach
11	chr6:64347200-64349000	Flanking Active TSS	Dnd41	blood
12	chr6:64347200-64353200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:64347200-64356400	Weak transcription	Aorta	Aorta
14	chr6:64347400-64348800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:64347400-64349000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:64347400-64350800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:64347400-64350800	Weak transcription	Psoas Muscle	Psoas
18	chr6:64347400-64350800	Weak transcription	Right Ventricle	heart
19	chr6:64347400-64351200	Enhancers	Adipose Nuclei	Adipose
20	chr6:64347400-64351200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:64347400-64351400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:64347400-64352400	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:64347400-64355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:64347400-64357000	Weak transcription	Placenta	Placenta
25	chr6:64347400-64358400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:64347400-64359600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:64347400-64370800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:64347600-64348800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:64347600-64350600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr6:64347600-64350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:64347600-64365200	Weak transcription	Fetal Stomach	stomach
32	chr6:64347600-64381000	Weak transcription	Fetal Thymus	thymus
33	chr6:64347800-64348800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:64347800-64348800	Flanking Active TSS	A549	lung
35	chr6:64347800-64349000	Enhancers	Brain Cingulate Gyrus	brain
36	chr6:64347800-64349400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:64347800-64349600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:64347800-64349600	Weak transcription	Ovary	ovary
39	chr6:64347800-64349600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:64347800-64349600	Weak transcription	HSMMtube	muscle
41	chr6:64347800-64349600	Weak transcription	NH-A	brain
42	chr6:64347800-64349600	Enhancers	NHDF-Ad	bronchial
43	chr6:64347800-64349800	Weak transcription	Thymus	Thymus
44	chr6:64347800-64350600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:64347800-64351000	Enhancers	Fetal Intestine Small	intestine
46	chr6:64347800-64351200	Enhancers	Brain Anterior Caudate	brain
47	chr6:64347800-64351200	Enhancers	Brain Hippocampus Middle	brain
48	chr6:64347800-64351200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr6:64347800-64353800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:64347800-64354600	Weak transcription	Primary T cells fromperipheralblood	blood

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