Variant report

Variant	rs72884665
Chromosome Location	chr6:64383692-64383693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64345767..64348847-chr6:64379987..64384270,3	K562	blood:
2	chr6:64280727..64283508-chr6:64382187..64384147,2	K562	blood:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56331162	1.00[AMR][1000 genomes]
rs72880874	1.00[AMR][1000 genomes]
rs72884629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884655	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72884679	1.00[AMR][1000 genomes]
rs72886320	1.00[AMR][1000 genomes]
rs72886338	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:64347800-64386400	Weak transcription	Colonic Mucosa	Colon
3	chr6:64351200-64385000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:64351200-64405000	Weak transcription	Thymus	Thymus
5	chr6:64354000-64421200	Weak transcription	Gastric	stomach
6	chr6:64357800-64393400	Weak transcription	Placenta	Placenta
7	chr6:64365200-64387000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:64365400-64386400	Weak transcription	Spleen	Spleen
9	chr6:64365800-64409400	Weak transcription	Fetal Stomach	stomach
10	chr6:64370800-64395000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:64370800-64413400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:64371000-64394200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:64371000-64409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:64373800-64384600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:64373800-64386400	Weak transcription	Pancreas	Pancrea
16	chr6:64373800-64394200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:64373800-64394600	Weak transcription	HSMMtube	muscle
18	chr6:64373800-64394800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:64374000-64384400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:64374000-64384600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:64374000-64384800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:64374000-64386200	Weak transcription	NHDF-Ad	bronchial
23	chr6:64374000-64387200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:64374000-64391600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:64374200-64384400	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:64374200-64384400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:64374200-64385400	Weak transcription	Brain Anterior Caudate	brain
28	chr6:64374200-64386400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:64374200-64386400	Weak transcription	Right Atrium	heart
30	chr6:64374200-64387000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:64374200-64393400	Weak transcription	HSMM	muscle
32	chr6:64374200-64394000	Weak transcription	NH-A	brain
33	chr6:64374200-64394200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:64374200-64405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:64374200-64414600	Weak transcription	HMEC	breast
36	chr6:64374400-64384600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:64374400-64385400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:64374400-64388800	Weak transcription	K562	blood
39	chr6:64375600-64409000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:64375800-64386400	Weak transcription	Left Ventricle	heart
41	chr6:64375800-64388600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:64377000-64394000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr6:64378600-64386800	Weak transcription	Aorta	Aorta
44	chr6:64379200-64388800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:64379400-64386800	Weak transcription	Fetal Kidney	kidney
46	chr6:64379600-64385200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:64380600-64389400	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr6:64381000-64383800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:64381000-64383800	Strong transcription	Fetal Thymus	thymus
50	chr6:64381000-64383800	Genic enhancers	HepG2	liver

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