Variant report

Variant	rs72885333
Chromosome Location	chr2:182449551-182449552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10490685	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12623687	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12623737	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13387426	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1375487	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55741565	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55743845	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55913132	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56081507	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56104379	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56263562	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56267648	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58383411	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58716781	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72883670	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72883678	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72883679	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72883681	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72885326	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72885327	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs971741	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1014910	chr2:182375267-182544114	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv536065	chr2:182375267-182544114	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv869674	chr2:182409485-182468632	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv834477	chr2:182438121-182593527	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182440400-182450400	Weak transcription	Stomach Mucosa	stomach
2	chr2:182447000-182450600	Weak transcription	GM12878-XiMat	blood
3	chr2:182448400-182449600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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