Variant report

Variant	rs72885800
Chromosome Location	chr2:48479834-48479835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17037226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17039245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56806229	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59044598	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60644316	0.83[AFR][1000 genomes]
rs61405465	1.00[AMR][1000 genomes]
rs6545032	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6707607	1.00[AMR][1000 genomes]
rs6709977	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6711828	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6723068	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6728719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6731708	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6750166	1.00[AMR][1000 genomes]
rs6751375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6757806	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72882131	1.00[AMR][1000 genomes]
rs72882141	1.00[AMR][1000 genomes]
rs72882148	1.00[AMR][1000 genomes]
rs72883965	1.00[AMR][1000 genomes]
rs72883976	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885760	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887610	0.84[AFR][1000 genomes]
rs72889604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889610	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7557354	1.00[AMR][1000 genomes]
rs7606543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9678904	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009769	chr2:47972642-48509765	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv535680	chr2:47972642-48509765	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv530831	chr2:48059709-48632317	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv519831	chr2:48072855-48566031	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv1003766	chr2:48102244-48559654	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1005241	chr2:48413134-48493182	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2762552	chr2:48413146-48493182	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv457407	chr2:48414735-48493182	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv581774	chr2:48414735-48493182	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1001850	chr2:48421389-48492090	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv535681	chr2:48421389-48492090	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48475400-48487200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:48476200-48482000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:48476400-48480000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:48476400-48481600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:48478200-48480000	Enhancers	HepG2	liver
6	chr2:48479000-48480200	Weak transcription	GM12878-XiMat	blood
7	chr2:48479000-48481000	Enhancers	K562	blood
8	chr2:48479400-48480200	Weak transcription	Primary B cells from cord blood	blood
9	chr2:48479400-48480200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:48479400-48483600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr2:48479400-48484800	Weak transcription	Fetal Intestine Small	intestine
12	chr2:48479600-48481200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:48479800-48482000	Enhancers	Primary B cells from peripheral blood	blood

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