Variant report

Variant	rs72886320
Chromosome Location	chr6:64435241-64435242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56331162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72880871	1.00[EUR][1000 genomes]
rs72880874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884629	1.00[AMR][1000 genomes]
rs72884652	1.00[AMR][1000 genomes]
rs72884655	1.00[AMR][1000 genomes]
rs72884665	1.00[AMR][1000 genomes]
rs72884679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886338	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64422600-64441800	Weak transcription	HSMM	muscle
2	chr6:64423400-64441200	Weak transcription	HUVEC	blood vessel
3	chr6:64423400-64441800	Weak transcription	Pancreas	Pancrea
4	chr6:64423600-64441600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:64423600-64441800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:64423600-64441800	Weak transcription	NHDF-Ad	bronchial
7	chr6:64423600-64444400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:64424200-64450400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:64425200-64441600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:64426400-64440800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:64426600-64435400	Weak transcription	Primary T cells from cord blood	blood
12	chr6:64426600-64441000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:64433800-64435600	Enhancers	Fetal Intestine Large	intestine
14	chr6:64433800-64436400	Enhancers	HepG2	liver
15	chr6:64433800-64436600	Enhancers	Liver	Liver
16	chr6:64434400-64436600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:64435000-64435400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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