Variant report

Variant	rs72890738
Chromosome Location	chr2:21142473-21142474
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs61072469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72890758	0.86[AFR][1000 genomes]
rs72890763	0.90[AFR][1000 genomes]
rs72890771	0.90[AFR][1000 genomes]
rs72890775	0.96[AFR][1000 genomes]
rs72890778	0.90[AFR][1000 genomes]
rs72890781	0.90[AFR][1000 genomes]
rs72890784	0.90[AFR][1000 genomes]
rs72890789	0.90[AFR][1000 genomes]
rs72890791	0.94[AFR][1000 genomes]
rs72902534	0.83[AFR][1000 genomes]
rs72902535	0.81[AFR][1000 genomes]
rs73226544	1.00[AMR][1000 genomes]
rs73226553	1.00[AMR][1000 genomes]
rs73226559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455852	chr2:21125742-21143329	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv581169	chr2:21125742-21143329	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21133400-21149400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:21141600-21142600	Weak transcription	Fetal Kidney	kidney
3	chr2:21142200-21143000	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr2:21142400-21143200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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