Variant report

Variant	rs72890758
Chromosome Location	chr2:21185201-21185202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20859421..20861870-chr2:21182899..21185433,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11893093	1.00[EUR][1000 genomes]
rs12713675	1.00[EUR][1000 genomes]
rs12720770	1.00[EUR][1000 genomes]
rs12720812	1.00[EUR][1000 genomes]
rs12720813	1.00[EUR][1000 genomes]
rs12720852	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720855	1.00[EUR][1000 genomes]
rs1437408	1.00[EUR][1000 genomes]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	1.00[EUR][1000 genomes]
rs340608	1.00[EUR][1000 genomes]
rs340614	1.00[EUR][1000 genomes]
rs548324	1.00[EUR][1000 genomes]
rs553687	1.00[EUR][1000 genomes]
rs571566	1.00[EUR][1000 genomes]
rs582107	1.00[EUR][1000 genomes]
rs59995050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61072469	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61743299	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs642152	1.00[EUR][1000 genomes]
rs648568	1.00[EUR][1000 genomes]
rs662193	1.00[EUR][1000 genomes]
rs6759981	1.00[EUR][1000 genomes]
rs72654435	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72888855	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72888859	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890738	0.86[AFR][1000 genomes]
rs72890747	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890789	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890791	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902534	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902535	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73224614	1.00[EUR][1000 genomes]
rs73226544	1.00[EUR][1000 genomes]
rs73226553	1.00[EUR][1000 genomes]
rs73226559	1.00[EUR][1000 genomes]
rs839914	1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21181000-21191400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:21184200-21185800	Enhancers	Stomach Smooth Muscle	stomach
3	chr2:21184200-21186000	Enhancers	Colon Smooth Muscle	Colon
4	chr2:21184200-21186000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:21184400-21185800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr2:21184400-21186000	Enhancers	Aorta	Aorta
7	chr2:21184600-21185600	Weak transcription	Rectal Smooth Muscle	rectum

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