Variant report

Variant	rs72893618
Chromosome Location	chr4:107187653-107187654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:107187038..107188038-chr4:107249952..107250600,3	MCF-7	breast:
2	chr4:107186942..107188312-chr4:107422810..107424188,6	MCF-7	breast:
3	chr4:107187206..107187713-chr4:107739937..107740444,2	MCF-7	breast:
4	chr4:107187507..107189111-chr4:107189607..107191483,2	K562	blood:
5	chr4:107186651..107188040-chr4:107422951..107423909,9	K562	blood:
6	chr4:107186600..107189007-chr4:107189607..107191897,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72876599	1.00[AFR][1000 genomes]
rs72893613	0.83[AFR][1000 genomes]
rs72964483	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879704	chr4:107095901-107212966	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879705	chr4:107179126-107212966	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107116800-107193800	Weak transcription	Small Intestine	intestine
3	chr4:107141600-107214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:107142400-107195800	Weak transcription	Psoas Muscle	Psoas
5	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:107157200-107203000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:107167200-107191800	Weak transcription	HUVEC	blood vessel
8	chr4:107170800-107208200	Weak transcription	Fetal Kidney	kidney
9	chr4:107172200-107194800	Weak transcription	Fetal Lung	lung
10	chr4:107177400-107189800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:107177400-107207600	Weak transcription	Fetal Brain Female	brain
12	chr4:107177600-107202600	Weak transcription	Primary T cells from cord blood	blood
13	chr4:107177600-107205600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:107177800-107196000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:107177800-107207600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:107177800-107207600	Weak transcription	Adipose Nuclei	Adipose
17	chr4:107177800-107211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:107177800-107215200	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:107178000-107188200	Enhancers	HepG2	liver
20	chr4:107178000-107194600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:107178000-107194600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:107178000-107194800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:107178000-107195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:107178000-107199400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:107178000-107205400	Weak transcription	Thymus	Thymus
26	chr4:107178000-107207800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:107178000-107207800	Weak transcription	Lung	lung
28	chr4:107178000-107207800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:107178000-107208200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:107178000-107208400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:107178000-107211800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:107178000-107211800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr4:107178000-107211800	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:107178000-107211800	Weak transcription	Fetal Stomach	stomach
35	chr4:107178000-107211800	Weak transcription	Left Ventricle	heart
36	chr4:107178000-107211800	Weak transcription	Ovary	ovary
37	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
39	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
40	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
41	chr4:107178200-107211600	Weak transcription	Placenta	Placenta
42	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:107178400-107194600	Weak transcription	GM12878-XiMat	blood
44	chr4:107178400-107198800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:107179000-107211400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr4:107179800-107191400	Weak transcription	HSMMtube	muscle
47	chr4:107179800-107208600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr4:107180000-107194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:107180200-107191000	Weak transcription	NHDF-Ad	bronchial
50	chr4:107180200-107191200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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