Variant report

Variant	rs72894539
Chromosome Location	chr2:184003727-184003728
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:183989189..183990903-chr2:184002119..184004777,2	MCF-7	breast:
2	chr2:183987113..183989914-chr2:184001624..184005072,5	K562	blood:
3	chr2:183994056..183995638-chr2:184003260..184004880,2	K562	blood:
4	chr2:184002655..184004806-chr2:184014352..184016566,2	K562	blood:
5	chr2:184001895..184006122-chr2:184006438..184011885,6	K562	blood:
6	chr2:183990685..183993122-chr2:184003291..184005876,2	K562	blood:

Variant related genes	Relation type
ENSG00000163002	Chromatin interaction

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1473614	1.00[EUR][1000 genomes]
rs1473615	1.00[EUR][1000 genomes]
rs1473616	1.00[EUR][1000 genomes]
rs2675053	0.92[EUR][1000 genomes]
rs2675054	1.00[EUR][1000 genomes]
rs2705715	1.00[EUR][1000 genomes]
rs2705718	1.00[EUR][1000 genomes]
rs2705719	1.00[EUR][1000 genomes]
rs2705720	1.00[EUR][1000 genomes]
rs2705721	1.00[EUR][1000 genomes]
rs35142583	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55657876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55678810	0.86[AMR][1000 genomes]
rs55696219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55707150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55764044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55957340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56152140	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56182353	0.88[EUR][1000 genomes]
rs6707761	0.87[AMR][1000 genomes]
rs6712479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6722457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6743323	0.88[EUR][1000 genomes]
rs6750392	0.88[EUR][1000 genomes]
rs72886518	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72886527	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886538	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886541	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886545	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886547	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886553	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886557	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886568	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886577	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886596	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886600	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888431	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888449	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888452	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888461	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888472	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888474	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888478	0.86[EUR][1000 genomes]
rs72888481	0.86[EUR][1000 genomes]
rs72888488	0.86[EUR][1000 genomes]
rs72888489	0.86[EUR][1000 genomes]
rs72890307	0.88[EUR][1000 genomes]
rs72890345	0.97[EUR][1000 genomes]
rs72890349	0.90[EUR][1000 genomes]
rs72890352	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72890353	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72890370	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72890384	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72890392	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72890398	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72892604	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72892631	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72892638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896517	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896518	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896534	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896586	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72896598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898538	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898545	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898555	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898558	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898562	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898566	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898569	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898573	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898574	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898578	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898581	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898584	0.86[EUR][1000 genomes]
rs72898600	0.86[AMR][1000 genomes]
rs72900543	0.86[AMR][1000 genomes]
rs7562034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7565260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7567370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7597417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1003519	chr2:183885544-184015868	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2763287	chr2:183939173-184037893	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183990000-184008600	Weak transcription	Esophagus	oesophagus
2	chr2:183990000-184008800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:183990000-184024400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:183990000-184050000	Weak transcription	Aorta	Aorta
5	chr2:183990200-184008200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:183990200-184014200	Weak transcription	HSMMtube	muscle
7	chr2:183990200-184018800	Weak transcription	Placenta	Placenta
8	chr2:183990200-184036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:183990600-184010200	Weak transcription	Brain Substantia Nigra	brain
10	chr2:183990600-184028600	Weak transcription	Colonic Mucosa	Colon
11	chr2:183990800-184025800	Weak transcription	Fetal Kidney	kidney
12	chr2:183990800-184031000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:183991000-184008000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:183991000-184008400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:183991000-184013400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:183991000-184018400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:183991000-184018400	Weak transcription	Gastric	stomach
18	chr2:183991000-184028600	Weak transcription	Right Ventricle	heart
19	chr2:183991000-184030400	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:183991000-184048400	Weak transcription	Brain Angular Gyrus	brain
21	chr2:183991000-184053400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:183991000-184055400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr2:183991200-184008200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:183991200-184008400	Weak transcription	Osteobl	bone
25	chr2:183991200-184008600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr2:183991200-184008800	Weak transcription	Brain Anterior Caudate	brain
27	chr2:183991200-184011400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:183991200-184035400	Weak transcription	Fetal Brain Male	brain
29	chr2:183991400-184008400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr2:183991400-184034000	Weak transcription	NHLF	lung
31	chr2:183991400-184049600	Weak transcription	NHDF-Ad	bronchial
32	chr2:183991600-184008400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr2:183991600-184014200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr2:183991600-184029600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr2:183991800-184008000	Weak transcription	Brain Germinal Matrix	brain
36	chr2:183991800-184008200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:183992000-184008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr2:183992200-184008200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr2:183992400-184047600	Weak transcription	Hela-S3	cervix
40	chr2:183992600-184005800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr2:183992800-184008000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr2:183993000-184006600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:183993000-184007200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr2:183993400-184007200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr2:183993600-184004000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr2:183994600-184008000	Strong transcription	Dnd41	blood
47	chr2:183995000-184008200	Weak transcription	Psoas Muscle	Psoas
48	chr2:183995200-184026000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr2:183995400-184008800	Weak transcription	NH-A	brain
50	chr2:183996000-184006600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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