Variant report

Variant	rs72894570
Chromosome Location	chr2:184015013-184015014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:184002655..184004806-chr2:184014352..184016566,2	K562	blood:
2	chr2:183988048..183989640-chr2:184013730..184015754,3	K562	blood:
3	chr2:184000064..184001821-chr2:184013911..184016128,2	MCF-7	breast:
4	chr2:184012662..184015271-chr2:184018990..184021565,2	K562	blood:

Variant related genes	Relation type
ENSG00000163002	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1473614	1.00[EUR][1000 genomes]
rs1473615	1.00[EUR][1000 genomes]
rs1473616	1.00[EUR][1000 genomes]
rs17706149	0.82[AFR][1000 genomes]
rs1997486	0.82[AFR][1000 genomes]
rs2675053	0.92[EUR][1000 genomes]
rs2675054	1.00[EUR][1000 genomes]
rs2705715	1.00[EUR][1000 genomes]
rs2705718	1.00[EUR][1000 genomes]
rs2705719	1.00[EUR][1000 genomes]
rs2705720	1.00[EUR][1000 genomes]
rs2705721	1.00[EUR][1000 genomes]
rs35142583	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4666890	0.82[AFR][1000 genomes]
rs55657876	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55678810	0.86[AMR][1000 genomes]
rs55696219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55707150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55764044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55957340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56152140	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56182353	0.88[EUR][1000 genomes]
rs6712479	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6722457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6743323	0.88[EUR][1000 genomes]
rs6750392	0.88[EUR][1000 genomes]
rs72886527	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886538	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886541	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886545	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886547	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886553	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886557	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886568	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886577	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886596	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72886600	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888431	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888449	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888452	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888461	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888464	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888472	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888474	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72888478	0.86[EUR][1000 genomes]
rs72888481	0.86[EUR][1000 genomes]
rs72888488	0.86[EUR][1000 genomes]
rs72888489	0.86[EUR][1000 genomes]
rs72890307	0.88[EUR][1000 genomes]
rs72890345	0.97[EUR][1000 genomes]
rs72890349	0.90[EUR][1000 genomes]
rs72890352	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72890353	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72890370	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72890384	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72890392	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72890398	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72892604	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72892631	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72892638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892689	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72892702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894514	0.82[AFR][1000 genomes]
rs72894523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894527	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894535	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894558	0.82[AFR][1000 genomes]
rs72894585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894593	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72894596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896534	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896556	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896558	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896559	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896586	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72896596	0.82[AFR][1000 genomes]
rs72896598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896599	0.82[AFR][1000 genomes]
rs72898507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898512	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898516	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898538	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898539	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898545	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898555	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898558	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898562	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898566	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898569	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898573	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898574	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898578	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72898581	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898584	0.86[EUR][1000 genomes]
rs72898600	0.86[AMR][1000 genomes]
rs72900543	0.86[AMR][1000 genomes]
rs7562034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7565260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7567370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7597417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1003519	chr2:183885544-184015868	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	esv2763287	chr2:183939173-184037893	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183990000-184024400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:183990000-184050000	Weak transcription	Aorta	Aorta
3	chr2:183990200-184018800	Weak transcription	Placenta	Placenta
4	chr2:183990200-184036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:183990600-184028600	Weak transcription	Colonic Mucosa	Colon
6	chr2:183990800-184025800	Weak transcription	Fetal Kidney	kidney
7	chr2:183990800-184031000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:183991000-184018400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:183991000-184018400	Weak transcription	Gastric	stomach
10	chr2:183991000-184028600	Weak transcription	Right Ventricle	heart
11	chr2:183991000-184030400	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:183991000-184048400	Weak transcription	Brain Angular Gyrus	brain
13	chr2:183991000-184053400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:183991000-184055400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:183991200-184035400	Weak transcription	Fetal Brain Male	brain
16	chr2:183991400-184034000	Weak transcription	NHLF	lung
17	chr2:183991400-184049600	Weak transcription	NHDF-Ad	bronchial
18	chr2:183991600-184029600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:183992400-184047600	Weak transcription	Hela-S3	cervix
20	chr2:183995200-184026000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr2:183996000-184026400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr2:183996400-184018400	Weak transcription	Lung	lung
23	chr2:183996400-184025800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr2:184002200-184017600	Weak transcription	Pancreas	Pancrea
25	chr2:184005000-184025200	Weak transcription	Left Ventricle	heart
26	chr2:184007800-184016600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr2:184009000-184015800	Weak transcription	Liver	Liver
28	chr2:184009000-184016200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr2:184009000-184018200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr2:184009000-184018200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:184009000-184023000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:184009000-184023600	Weak transcription	HMEC	breast
33	chr2:184009000-184028600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr2:184009000-184043800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr2:184009200-184015600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr2:184009200-184015800	Weak transcription	HUVEC	blood vessel
37	chr2:184009200-184015800	Weak transcription	NHEK	skin
38	chr2:184009200-184016000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:184009200-184016000	Weak transcription	Fetal Lung	lung
40	chr2:184009200-184016400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:184009200-184017000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:184009200-184017000	Weak transcription	Fetal Intestine Large	intestine
43	chr2:184009200-184017000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr2:184009200-184017000	Weak transcription	Thymus	Thymus
45	chr2:184009200-184017400	Weak transcription	Fetal Brain Female	brain
46	chr2:184009200-184017400	Weak transcription	Fetal Thymus	thymus
47	chr2:184009200-184018200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr2:184009200-184024200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:184009200-184024200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:184009200-184025000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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