Variant report
| Variant | rs72897629 |
|---|---|
| Chromosome Location | chr3:82044521-82044522 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:82044423..82045130-chr3:82182277..82182777,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs17019544 | 1.00[EUR][1000 genomes] |
| rs1919568 | 1.00[EUR][1000 genomes] |
| rs57027601 | 1.00[EUR][1000 genomes] |
| rs57470806 | 1.00[EUR][1000 genomes] |
| rs57551871 | 1.00[EUR][1000 genomes] |
| rs57560125 | 1.00[EUR][1000 genomes] |
| rs57996908 | 1.00[EUR][1000 genomes] |
| rs58087753 | 1.00[EUR][1000 genomes] |
| rs58504250 | 1.00[EUR][1000 genomes] |
| rs59631704 | 1.00[EUR][1000 genomes] |
| rs60957164 | 1.00[EUR][1000 genomes] |
| rs61484580 | 1.00[EUR][1000 genomes] |
| rs72895828 | 1.00[EUR][1000 genomes] |
| rs72895832 | 1.00[EUR][1000 genomes] |
| rs72895840 | 1.00[EUR][1000 genomes] |
| rs72895845 | 1.00[EUR][1000 genomes] |
| rs72895859 | 1.00[EUR][1000 genomes] |
| rs72897645 | 1.00[EUR][1000 genomes] |
| rs72897657 | 1.00[EUR][1000 genomes] |
| rs72897666 | 1.00[EUR][1000 genomes] |
| rs72897671 | 1.00[EUR][1000 genomes] |
| rs72897675 | 1.00[EUR][1000 genomes] |
| rs72897678 | 1.00[EUR][1000 genomes] |
| rs72897679 | 1.00[EUR][1000 genomes] |
| rs72897682 | 1.00[EUR][1000 genomes] |
| rs72897684 | 1.00[EUR][1000 genomes] |
| rs72897700 | 1.00[EUR][1000 genomes] |
| rs72899612 | 1.00[EUR][1000 genomes] |
| rs72899615 | 1.00[EUR][1000 genomes] |
| rs72899621 | 1.00[EUR][1000 genomes] |
| rs72899624 | 1.00[EUR][1000 genomes] |
| rs72899627 | 1.00[EUR][1000 genomes] |
| rs72899632 | 1.00[EUR][1000 genomes] |
| rs72899652 | 1.00[EUR][1000 genomes] |
| rs72899670 | 1.00[EUR][1000 genomes] |
| rs72901640 | 1.00[EUR][1000 genomes] |
| rs72901647 | 1.00[EUR][1000 genomes] |
| rs72901650 | 1.00[EUR][1000 genomes] |
| rs72901652 | 1.00[EUR][1000 genomes] |
| rs72912148 | 1.00[EUR][1000 genomes] |
| rs73855821 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752870 | chr3:82014410-82050310 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82039400-82046000 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr3:82044200-82049800 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
