Variant report

Variant	rs72897645
Chromosome Location	chr3:82052644-82052645
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1609392	0.86[AFR][1000 genomes]
rs17019544	1.00[EUR][1000 genomes]
rs1919568	1.00[EUR][1000 genomes]
rs57027601	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57470806	1.00[EUR][1000 genomes]
rs57551871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57560125	1.00[EUR][1000 genomes]
rs57996908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58087753	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58504250	1.00[EUR][1000 genomes]
rs59631704	1.00[EUR][1000 genomes]
rs60957164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61484580	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895828	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895832	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895840	1.00[EUR][1000 genomes]
rs72895845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895859	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897629	1.00[EUR][1000 genomes]
rs72897657	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72897666	1.00[EUR][1000 genomes]
rs72897671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897678	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897679	1.00[EUR][1000 genomes]
rs72897682	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897684	1.00[EUR][1000 genomes]
rs72897700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899612	1.00[EUR][1000 genomes]
rs72899615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899621	1.00[EUR][1000 genomes]
rs72899624	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899627	1.00[EUR][1000 genomes]
rs72899632	1.00[EUR][1000 genomes]
rs72899652	1.00[EUR][1000 genomes]
rs72899670	1.00[EUR][1000 genomes]
rs72901640	1.00[EUR][1000 genomes]
rs72901647	1.00[EUR][1000 genomes]
rs72901650	1.00[EUR][1000 genomes]
rs72901652	1.00[EUR][1000 genomes]
rs72901659	1.00[EUR][1000 genomes]
rs72912148	1.00[EUR][1000 genomes]
rs73855821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82046200-82053800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:82047200-82052800	Enhancers	Brain Germinal Matrix	brain
3	chr3:82049400-82055000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:82049600-82052800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:82049600-82055000	Enhancers	Fetal Brain Male	brain
6	chr3:82049800-82055000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:82050000-82053400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:82050000-82054600	Enhancers	Fetal Brain Female	brain
9	chr3:82050400-82052800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:82050400-82053400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:82050600-82054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:82051400-82053000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:82051400-82054800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:82051800-82052800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:82051800-82053000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:82052000-82052800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:82052000-82053000	Enhancers	Brain Angular Gyrus	brain
18	chr3:82052000-82053000	Enhancers	Brain Anterior Caudate	brain

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