Variant report

Variant	rs72897675
Chromosome Location	chr3:82080310-82080311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1609392	0.93[AFR][1000 genomes]
rs17019544	1.00[EUR][1000 genomes]
rs1919568	1.00[EUR][1000 genomes]
rs56938587	0.82[AFR][1000 genomes]
rs57027601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57470806	1.00[EUR][1000 genomes]
rs57551871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57560125	1.00[EUR][1000 genomes]
rs57996908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58087753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58504250	1.00[EUR][1000 genomes]
rs59631704	1.00[EUR][1000 genomes]
rs60957164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61484580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895840	1.00[EUR][1000 genomes]
rs72895845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72895859	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897629	1.00[EUR][1000 genomes]
rs72897645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897657	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72897666	1.00[EUR][1000 genomes]
rs72897671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897679	1.00[EUR][1000 genomes]
rs72897682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897684	1.00[EUR][1000 genomes]
rs72897700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899612	1.00[EUR][1000 genomes]
rs72899615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899621	1.00[EUR][1000 genomes]
rs72899624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899627	1.00[EUR][1000 genomes]
rs72899632	1.00[EUR][1000 genomes]
rs72899652	1.00[EUR][1000 genomes]
rs72899670	1.00[EUR][1000 genomes]
rs72901640	1.00[EUR][1000 genomes]
rs72901647	1.00[EUR][1000 genomes]
rs72901650	1.00[EUR][1000 genomes]
rs72901652	1.00[EUR][1000 genomes]
rs72901659	1.00[EUR][1000 genomes]
rs72912148	1.00[EUR][1000 genomes]
rs73855821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82079600-82080400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:82079600-82080600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:82079600-82081000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:82079600-82081000	Enhancers	Fetal Muscle Leg	muscle
5	chr3:82079600-82082200	Enhancers	Brain Germinal Matrix	brain
6	chr3:82079600-82082600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr3:82079800-82080400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:82079800-82080400	Flanking Active TSS	Brain Angular Gyrus	brain
9	chr3:82079800-82080600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:82079800-82080600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:82079800-82080800	Enhancers	Fetal Stomach	stomach
12	chr3:82079800-82080800	Enhancers	Psoas Muscle	Psoas
13	chr3:82079800-82081200	Enhancers	Ovary	ovary
14	chr3:82080000-82080400	Active TSS	Brain Anterior Caudate	brain
15	chr3:82080000-82080400	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr3:82080000-82080400	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr3:82080000-82080400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr3:82080000-82080600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:82080000-82080600	Active TSS	Brain Substantia Nigra	brain
20	chr3:82080000-82080800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:82080200-82080800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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