Variant report

Variant	rs728979
Chromosome Location	chr14:67928854-67928855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:67928246..67929078-chr14:67946550..67947331,3	MCF-7	breast:
2	chr14:67928466..67932816-chr14:67938653..67942762,5	MCF-7	breast:
3	chr14:67928154..67928999-chr14:67946524..67947358,3	MCF-7	breast:
4	chr14:67928363..67930468-chr14:67978414..67980438,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7159020	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67924800-67931200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:67925200-67929000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr14:67925200-67929000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:67925400-67930800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:67926200-67932800	Enhancers	Placenta	Placenta
6	chr14:67926800-67929800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr14:67927600-67929000	Enhancers	HSMMtube	muscle
8	chr14:67927600-67929400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:67927600-67932600	Weak transcription	Fetal Brain Male	brain
10	chr14:67927800-67929000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:67927800-67929000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:67927800-67929000	Enhancers	Hela-S3	cervix
13	chr14:67927800-67935400	Enhancers	Fetal Thymus	thymus
14	chr14:67928000-67929000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:67928000-67929000	Enhancers	Adipose Nuclei	Adipose
16	chr14:67928000-67929000	Enhancers	Psoas Muscle	Psoas
17	chr14:67928000-67929200	Enhancers	Fetal Intestine Small	intestine
18	chr14:67928200-67929000	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr14:67928200-67929200	Enhancers	Lung	lung
20	chr14:67928200-67935200	Enhancers	Thymus	Thymus
21	chr14:67928400-67931400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:67928600-67929000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr14:67928600-67934400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:67928800-67931400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:67928800-67932600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:67928800-67932600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr14:67928800-67933800	Weak transcription	Fetal Intestine Large	intestine
28	chr14:67928800-67946600	Weak transcription	Pancreas	Pancrea

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