Variant report

Variant	rs72898584
Chromosome Location	chr2:184077866-184077867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUP35-2	chr2:184075920-184078579	NONHSAT075944
2	lnc-NUP35-2	chr2:184077371-184078450	NONHSAT075940

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1473614	0.86[EUR][1000 genomes]
rs1473615	0.86[EUR][1000 genomes]
rs1473616	0.86[EUR][1000 genomes]
rs2675054	0.86[EUR][1000 genomes]
rs2705715	0.86[EUR][1000 genomes]
rs2705718	0.86[EUR][1000 genomes]
rs2705719	0.86[EUR][1000 genomes]
rs2705720	0.86[EUR][1000 genomes]
rs2705721	0.86[EUR][1000 genomes]
rs55657876	0.86[EUR][1000 genomes]
rs55696219	0.86[EUR][1000 genomes]
rs55707150	0.86[EUR][1000 genomes]
rs55764044	0.86[EUR][1000 genomes]
rs55957340	0.86[EUR][1000 genomes]
rs6712479	0.86[EUR][1000 genomes]
rs6722457	0.86[EUR][1000 genomes]
rs72890345	0.82[EUR][1000 genomes]
rs72890370	0.81[EUR][1000 genomes]
rs72892604	0.81[EUR][1000 genomes]
rs72892631	0.81[EUR][1000 genomes]
rs72892638	0.86[EUR][1000 genomes]
rs72892656	0.86[EUR][1000 genomes]
rs72892689	0.86[EUR][1000 genomes]
rs72892694	0.86[EUR][1000 genomes]
rs72892702	0.86[EUR][1000 genomes]
rs72894503	0.86[EUR][1000 genomes]
rs72894513	0.86[EUR][1000 genomes]
rs72894523	0.86[EUR][1000 genomes]
rs72894527	0.86[EUR][1000 genomes]
rs72894533	0.86[EUR][1000 genomes]
rs72894535	0.86[EUR][1000 genomes]
rs72894537	0.86[EUR][1000 genomes]
rs72894539	0.86[EUR][1000 genomes]
rs72894544	0.86[EUR][1000 genomes]
rs72894546	0.86[EUR][1000 genomes]
rs72894570	0.86[EUR][1000 genomes]
rs72894585	0.86[EUR][1000 genomes]
rs72894593	0.86[EUR][1000 genomes]
rs72894596	0.86[EUR][1000 genomes]
rs72896508	0.86[EUR][1000 genomes]
rs72896517	0.86[EUR][1000 genomes]
rs72896518	0.86[EUR][1000 genomes]
rs72896520	0.86[EUR][1000 genomes]
rs72896524	0.86[EUR][1000 genomes]
rs72896528	0.86[EUR][1000 genomes]
rs72896534	0.86[EUR][1000 genomes]
rs72896555	0.86[EUR][1000 genomes]
rs72896556	0.86[EUR][1000 genomes]
rs72896558	0.86[EUR][1000 genomes]
rs72896559	0.86[EUR][1000 genomes]
rs72896560	0.86[EUR][1000 genomes]
rs72896567	0.86[EUR][1000 genomes]
rs72896581	0.86[EUR][1000 genomes]
rs72896586	0.83[EUR][1000 genomes]
rs72896598	0.86[EUR][1000 genomes]
rs72898507	0.86[EUR][1000 genomes]
rs72898512	0.86[EUR][1000 genomes]
rs72898513	0.86[EUR][1000 genomes]
rs72898514	0.86[EUR][1000 genomes]
rs72898516	0.86[EUR][1000 genomes]
rs72898517	0.86[EUR][1000 genomes]
rs72898522	0.86[EUR][1000 genomes]
rs72898525	0.86[EUR][1000 genomes]
rs72898529	0.86[EUR][1000 genomes]
rs72898532	0.86[EUR][1000 genomes]
rs72898535	0.86[EUR][1000 genomes]
rs72898538	0.83[EUR][1000 genomes]
rs72898539	0.86[EUR][1000 genomes]
rs72898542	0.86[EUR][1000 genomes]
rs72898545	0.83[EUR][1000 genomes]
rs72898548	0.86[EUR][1000 genomes]
rs72898555	0.86[EUR][1000 genomes]
rs72898558	0.86[EUR][1000 genomes]
rs72898562	0.83[EUR][1000 genomes]
rs72898566	0.86[EUR][1000 genomes]
rs72898569	0.86[EUR][1000 genomes]
rs72898573	0.86[EUR][1000 genomes]
rs72898574	0.86[EUR][1000 genomes]
rs72898578	0.83[EUR][1000 genomes]
rs72898581	0.86[EUR][1000 genomes]
rs7562034	0.86[EUR][1000 genomes]
rs7565260	0.86[EUR][1000 genomes]
rs7567370	0.86[EUR][1000 genomes]
rs7577407	0.86[EUR][1000 genomes]
rs7597417	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv875486	chr2:184016627-184095979	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184047800-184078400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:184049000-184078000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:184050400-184091600	Weak transcription	Psoas Muscle	Psoas
4	chr2:184062800-184080600	Weak transcription	K562	blood
5	chr2:184072200-184082800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:184072600-184094000	Weak transcription	HSMM	muscle
7	chr2:184073000-184084600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:184074800-184079200	Weak transcription	Dnd41	blood
9	chr2:184074800-184080600	Weak transcription	A549	lung
10	chr2:184077200-184080000	Weak transcription	Primary T cells from cord blood	blood

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