Variant report

Variant	rs72899652
Chromosome Location	chr3:82115005-82115006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17019544	1.00[EUR][1000 genomes]
rs1919568	1.00[EUR][1000 genomes]
rs57027601	1.00[EUR][1000 genomes]
rs57470806	1.00[EUR][1000 genomes]
rs57551871	1.00[EUR][1000 genomes]
rs57560125	1.00[EUR][1000 genomes]
rs57996908	1.00[EUR][1000 genomes]
rs58087753	1.00[EUR][1000 genomes]
rs58504250	1.00[EUR][1000 genomes]
rs59631704	1.00[EUR][1000 genomes]
rs60957164	1.00[EUR][1000 genomes]
rs61484580	1.00[EUR][1000 genomes]
rs72895828	1.00[EUR][1000 genomes]
rs72895832	1.00[EUR][1000 genomes]
rs72895840	1.00[EUR][1000 genomes]
rs72895845	1.00[EUR][1000 genomes]
rs72895859	1.00[EUR][1000 genomes]
rs72897629	1.00[EUR][1000 genomes]
rs72897645	1.00[EUR][1000 genomes]
rs72897657	1.00[EUR][1000 genomes]
rs72897666	1.00[EUR][1000 genomes]
rs72897671	1.00[EUR][1000 genomes]
rs72897675	1.00[EUR][1000 genomes]
rs72897678	1.00[EUR][1000 genomes]
rs72897679	1.00[EUR][1000 genomes]
rs72897682	1.00[EUR][1000 genomes]
rs72897684	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72897700	1.00[EUR][1000 genomes]
rs72899612	1.00[EUR][1000 genomes]
rs72899615	1.00[EUR][1000 genomes]
rs72899621	1.00[EUR][1000 genomes]
rs72899624	1.00[EUR][1000 genomes]
rs72899627	1.00[EUR][1000 genomes]
rs72899632	1.00[EUR][1000 genomes]
rs72899670	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901640	1.00[EUR][1000 genomes]
rs72901647	1.00[EUR][1000 genomes]
rs72901650	1.00[EUR][1000 genomes]
rs72901652	1.00[EUR][1000 genomes]
rs72901659	1.00[EUR][1000 genomes]
rs72901690	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72912148	1.00[EUR][1000 genomes]
rs73855821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82111600-82115600	Weak transcription	HepG2	liver
2	chr3:82115000-82116000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:82115000-82116000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:82115000-82117000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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