Variant report

Variant	rs72899670
Chromosome Location	chr3:82132872-82132873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17019544	1.00[EUR][1000 genomes]
rs1919568	1.00[EUR][1000 genomes]
rs57027601	1.00[EUR][1000 genomes]
rs57470806	1.00[EUR][1000 genomes]
rs57551871	1.00[EUR][1000 genomes]
rs57560125	1.00[EUR][1000 genomes]
rs57996908	1.00[EUR][1000 genomes]
rs58087753	1.00[EUR][1000 genomes]
rs58504250	1.00[EUR][1000 genomes]
rs59631704	1.00[EUR][1000 genomes]
rs60957164	1.00[EUR][1000 genomes]
rs61484580	1.00[EUR][1000 genomes]
rs72895828	1.00[EUR][1000 genomes]
rs72895832	1.00[EUR][1000 genomes]
rs72895840	1.00[EUR][1000 genomes]
rs72895845	1.00[EUR][1000 genomes]
rs72895859	1.00[EUR][1000 genomes]
rs72897629	1.00[EUR][1000 genomes]
rs72897645	1.00[EUR][1000 genomes]
rs72897657	1.00[EUR][1000 genomes]
rs72897666	1.00[EUR][1000 genomes]
rs72897671	1.00[EUR][1000 genomes]
rs72897675	1.00[EUR][1000 genomes]
rs72897678	1.00[EUR][1000 genomes]
rs72897679	1.00[EUR][1000 genomes]
rs72897682	1.00[EUR][1000 genomes]
rs72897684	1.00[EUR][1000 genomes]
rs72897700	1.00[EUR][1000 genomes]
rs72899612	1.00[EUR][1000 genomes]
rs72899615	1.00[EUR][1000 genomes]
rs72899621	1.00[EUR][1000 genomes]
rs72899624	1.00[EUR][1000 genomes]
rs72899627	1.00[EUR][1000 genomes]
rs72899632	1.00[EUR][1000 genomes]
rs72899652	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901640	1.00[EUR][1000 genomes]
rs72901647	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901650	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901652	1.00[EUR][1000 genomes]
rs72901659	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72901690	1.00[EUR][1000 genomes]
rs72912148	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82130000-82133200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr3:82130200-82133400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:82130200-82133600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:82130200-82133600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:82130200-82133600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:82130200-82134000	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:82130200-82134400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:82130200-82134600	Weak transcription	HSMMtube	muscle
9	chr3:82130400-82133000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:82130800-82133600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:82130800-82136800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:82130800-82136800	Weak transcription	NHEK	skin
13	chr3:82131200-82133400	Weak transcription	HUVEC	blood vessel
14	chr3:82131200-82134400	Weak transcription	HMEC	breast
15	chr3:82131800-82133000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:82132000-82133000	Enhancers	Primary B cells from cord blood	blood
17	chr3:82132200-82133000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:82132400-82133600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:82132400-82134200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:82132600-82133600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:82132600-82134400	Weak transcription	HSMM	muscle
22	chr3:82132600-82134400	Weak transcription	NH-A	brain
23	chr3:82132800-82133800	Weak transcription	Dnd41	blood
24	chr3:82132800-82134400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:82132800-82135000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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