Variant report

Variant	rs72900057
Chromosome Location	chr6:81218594-81218595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81213174..81214838-chr6:81216651..81219122,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1020044	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10498922	0.91[EUR][1000 genomes]
rs10498923	0.90[EUR][1000 genomes]
rs11752368	0.90[EUR][1000 genomes]
rs11752731	0.89[EUR][1000 genomes]
rs11963755	0.89[EUR][1000 genomes]
rs11963784	0.89[EUR][1000 genomes]
rs11963880	0.87[EUR][1000 genomes]
rs11966105	0.89[EUR][1000 genomes]
rs11966395	0.89[EUR][1000 genomes]
rs11969171	0.89[EUR][1000 genomes]
rs1370139	0.89[EUR][1000 genomes]
rs1436876	0.89[EUR][1000 genomes]
rs1545108	0.89[EUR][1000 genomes]
rs17754916	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17755364	0.91[EUR][1000 genomes]
rs17755544	0.90[EUR][1000 genomes]
rs17811367	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17811451	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2118146	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3011305	0.81[ASN][1000 genomes]
rs4538675	0.89[EUR][1000 genomes]
rs4596443	0.88[EUR][1000 genomes]
rs4607395	0.89[EUR][1000 genomes]
rs4639292	0.89[EUR][1000 genomes]
rs56293655	0.89[EUR][1000 genomes]
rs57091572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57688593	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57846754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57961232	0.86[EUR][1000 genomes]
rs58167343	0.90[EUR][1000 genomes]
rs6927060	0.89[EUR][1000 genomes]
rs72900010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72901930	0.89[EUR][1000 genomes]
rs72901972	0.90[EUR][1000 genomes]
rs72901979	0.90[EUR][1000 genomes]
rs72901986	0.89[EUR][1000 genomes]
rs72901988	0.89[EUR][1000 genomes]
rs72903917	0.89[EUR][1000 genomes]
rs72903939	0.87[EUR][1000 genomes]
rs72903959	0.81[EUR][1000 genomes]
rs72903988	0.87[EUR][1000 genomes]
rs7765619	0.89[EUR][1000 genomes]
rs7768393	0.89[EUR][1000 genomes]
rs7768485	0.89[EUR][1000 genomes]
rs9443793	0.89[EUR][1000 genomes]
rs9449036	0.88[EUR][1000 genomes]
rs9449037	0.89[EUR][1000 genomes]
rs9449038	0.81[EUR][1000 genomes]
rs9449043	0.89[EUR][1000 genomes]
rs9449045	0.89[EUR][1000 genomes]
rs9449046	0.89[EUR][1000 genomes]
rs9449049	0.89[EUR][1000 genomes]
rs9449050	0.89[EUR][1000 genomes]
rs998759	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81208000-81222600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:81217200-81220400	Enhancers	HepG2	liver
3	chr6:81218200-81219400	Enhancers	Liver	Liver
4	chr6:81218400-81219000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:81218400-81219200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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