Variant report

Variant	rs72900543
Chromosome Location	chr2:184142259-184142260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11888779	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13424714	0.88[EUR][1000 genomes]
rs55657876	0.86[AMR][1000 genomes]
rs55678810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55696219	0.86[AMR][1000 genomes]
rs55707150	0.86[AMR][1000 genomes]
rs55764044	0.86[AMR][1000 genomes]
rs55957340	0.86[AMR][1000 genomes]
rs6712479	0.86[AMR][1000 genomes]
rs6722457	0.86[AMR][1000 genomes]
rs72890352	0.86[AMR][1000 genomes]
rs72890353	0.86[AMR][1000 genomes]
rs72890370	0.86[AMR][1000 genomes]
rs72890384	0.86[AMR][1000 genomes]
rs72890392	0.86[AMR][1000 genomes]
rs72890398	0.86[AMR][1000 genomes]
rs72892604	0.86[AMR][1000 genomes]
rs72892631	0.81[AMR][1000 genomes]
rs72892638	0.86[AMR][1000 genomes]
rs72892656	0.86[AMR][1000 genomes]
rs72892689	0.86[AMR][1000 genomes]
rs72892694	0.86[AMR][1000 genomes]
rs72892702	0.86[AMR][1000 genomes]
rs72894503	0.86[AMR][1000 genomes]
rs72894513	0.86[AMR][1000 genomes]
rs72894523	0.86[AMR][1000 genomes]
rs72894527	0.86[AMR][1000 genomes]
rs72894533	0.86[AMR][1000 genomes]
rs72894535	0.86[AMR][1000 genomes]
rs72894537	0.86[AMR][1000 genomes]
rs72894539	0.86[AMR][1000 genomes]
rs72894544	0.86[AMR][1000 genomes]
rs72894546	0.86[AMR][1000 genomes]
rs72894570	0.86[AMR][1000 genomes]
rs72894585	0.86[AMR][1000 genomes]
rs72894593	0.86[AMR][1000 genomes]
rs72894596	0.86[AMR][1000 genomes]
rs72896508	0.86[AMR][1000 genomes]
rs72896517	0.86[AMR][1000 genomes]
rs72896518	0.86[AMR][1000 genomes]
rs72896520	0.86[AMR][1000 genomes]
rs72896524	0.86[AMR][1000 genomes]
rs72896528	0.86[AMR][1000 genomes]
rs72896555	0.86[AMR][1000 genomes]
rs72896556	0.86[AMR][1000 genomes]
rs72896558	0.86[AMR][1000 genomes]
rs72896559	0.86[AMR][1000 genomes]
rs72896560	0.86[AMR][1000 genomes]
rs72896567	0.86[AMR][1000 genomes]
rs72896581	0.86[AMR][1000 genomes]
rs72896586	0.81[AMR][1000 genomes]
rs72896598	0.86[AMR][1000 genomes]
rs72898507	0.86[AMR][1000 genomes]
rs72898512	0.86[AMR][1000 genomes]
rs72898513	0.86[AMR][1000 genomes]
rs72898514	0.86[AMR][1000 genomes]
rs72898516	0.86[AMR][1000 genomes]
rs72898517	0.86[AMR][1000 genomes]
rs72898522	0.86[AMR][1000 genomes]
rs72898525	0.86[AMR][1000 genomes]
rs72898529	0.86[AMR][1000 genomes]
rs72898532	0.86[AMR][1000 genomes]
rs72898535	0.86[AMR][1000 genomes]
rs72898538	0.81[AMR][1000 genomes]
rs72898539	0.86[AMR][1000 genomes]
rs72898542	0.86[AMR][1000 genomes]
rs72898545	0.86[AMR][1000 genomes]
rs72898548	0.86[AMR][1000 genomes]
rs72898586	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72898600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7562034	0.86[AMR][1000 genomes]
rs7565260	0.86[AMR][1000 genomes]
rs7567370	0.86[AMR][1000 genomes]
rs7577407	0.86[AMR][1000 genomes]
rs7597417	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv583951	chr2:184121475-184142975	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1014807	chr2:184123737-184181052	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184131800-184147600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:184142200-184158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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