Variant report

Variant	rs72900766
Chromosome Location	chr2:183752888-183752889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183752548..183754823-chr2:183756546..183759081,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs35142583	1.00[AMR][1000 genomes]
rs36077496	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56152140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56182353	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6707761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6743323	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6750392	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72886518	1.00[AMR][1000 genomes]
rs72886527	1.00[AMR][1000 genomes]
rs72886538	1.00[AMR][1000 genomes]
rs72886541	1.00[AMR][1000 genomes]
rs72886545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886547	1.00[AMR][1000 genomes]
rs72886553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886568	1.00[AMR][1000 genomes]
rs72886577	1.00[AMR][1000 genomes]
rs72886596	1.00[AMR][1000 genomes]
rs72886600	1.00[AMR][1000 genomes]
rs72888431	1.00[AMR][1000 genomes]
rs72888449	1.00[AMR][1000 genomes]
rs72888452	1.00[AMR][1000 genomes]
rs72888461	1.00[AMR][1000 genomes]
rs72888464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888472	1.00[AMR][1000 genomes]
rs72888474	1.00[AMR][1000 genomes]
rs72888478	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72888481	0.87[AMR][1000 genomes]
rs72888488	0.87[AMR][1000 genomes]
rs72888489	0.87[AMR][1000 genomes]
rs72890307	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72890315	1.00[AFR][1000 genomes]
rs72890345	0.87[AMR][1000 genomes]
rs72890349	0.87[AMR][1000 genomes]
rs72890352	1.00[AMR][1000 genomes]
rs72890353	1.00[AMR][1000 genomes]
rs72890370	1.00[AMR][1000 genomes]
rs72890384	1.00[AMR][1000 genomes]
rs72890392	1.00[AMR][1000 genomes]
rs72890398	1.00[AMR][1000 genomes]
rs72892604	1.00[AMR][1000 genomes]
rs72892631	0.81[AMR][1000 genomes]
rs72892638	0.87[AMR][1000 genomes]
rs72892656	0.87[AMR][1000 genomes]
rs72900772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72900775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72900780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73042116	0.90[EUR][1000 genomes]
rs73042118	0.90[EUR][1000 genomes]
rs73042121	0.90[EUR][1000 genomes]
rs73042128	0.90[EUR][1000 genomes]
rs7566497	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2757842	chr2:183437700-183835084	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759104	chr2:183437700-183835084	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2756954	chr2:183528670-183764930	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv34847	chr2:183537399-183786763	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1006265	chr2:183666013-183777604	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv536071	chr2:183666013-183777604	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv818096	chr2:183701588-183827018	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183748200-183758600	Weak transcription	Pancreas	Pancrea
2	chr2:183748800-183758800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:183752000-183755000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:183752200-183755000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:183752200-183755000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:183752400-183772000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:183752800-183758400	Weak transcription	Aorta	Aorta

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