Variant report

Variant	rs72901914
Chromosome Location	chr6:81231493-81231494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72898021	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72901993	0.87[EUR][1000 genomes]
rs72903940	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81227000-81232800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:81227200-81232600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:81227600-81231800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:81227600-81231800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:81227600-81231800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:81227600-81232800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:81227800-81232000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:81228000-81231800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:81229800-81231600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:81229800-81233200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:81230000-81231800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:81230200-81231600	Weak transcription	HUVEC	blood vessel
13	chr6:81230200-81234000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:81230400-81231800	Weak transcription	NH-A	brain
15	chr6:81230400-81232400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:81230400-81232400	Weak transcription	Osteobl	bone
17	chr6:81230400-81237800	Weak transcription	Pancreas	Pancrea
18	chr6:81230600-81231800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:81230600-81231800	Weak transcription	HSMM	muscle
20	chr6:81230600-81232000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:81230600-81232600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:81230800-81232400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:81230800-81234000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:81231000-81231800	Weak transcription	NHDF-Ad	bronchial
25	chr6:81231000-81232400	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:81231000-81232800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:81231200-81231600	Weak transcription	Fetal Brain Female	brain
28	chr6:81231200-81232600	Enhancers	Stomach Smooth Muscle	stomach
29	chr6:81231400-81232400	Weak transcription	Brain Germinal Matrix	brain
30	chr6:81231400-81233600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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