Variant report

Variant	rs72902534
Chromosome Location	chr2:21209965-21209966
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21203233..21206131-chr2:21209365..21210977,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs12713675	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720770	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720812	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720813	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720852	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12720855	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16988071	1.00[EUR][1000 genomes]
rs1866043	1.00[EUR][1000 genomes]
rs340605	1.00[EUR][1000 genomes]
rs340608	1.00[EUR][1000 genomes]
rs340614	1.00[EUR][1000 genomes]
rs548324	1.00[EUR][1000 genomes]
rs553687	1.00[EUR][1000 genomes]
rs571566	1.00[EUR][1000 genomes]
rs582107	1.00[EUR][1000 genomes]
rs59995050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61072469	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61743299	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs642152	1.00[EUR][1000 genomes]
rs662193	1.00[EUR][1000 genomes]
rs72654435	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72888848	1.00[EUR][1000 genomes]
rs72888854	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72888855	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72888859	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890734	1.00[EUR][1000 genomes]
rs72890738	0.83[AFR][1000 genomes]
rs72890747	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72890758	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890775	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890778	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890781	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890789	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890791	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902538	1.00[EUR][1000 genomes]
rs72902540	1.00[EUR][1000 genomes]
rs72902541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72902542	1.00[EUR][1000 genomes]
rs72902544	1.00[EUR][1000 genomes]
rs72902548	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73224614	1.00[EUR][1000 genomes]
rs73226544	1.00[EUR][1000 genomes]
rs73226553	1.00[EUR][1000 genomes]
rs73226559	1.00[EUR][1000 genomes]
rs839914	1.00[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21206800-21210200	Enhancers	Stomach Smooth Muscle	stomach
2	chr2:21206800-21210800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr2:21207000-21214000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:21207200-21214600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:21208000-21210200	Enhancers	Adipose Nuclei	Adipose
6	chr2:21208600-21212000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:21208600-21214200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:21208600-21214200	Weak transcription	Aorta	Aorta
9	chr2:21208600-21214600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:21208800-21212200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:21209000-21212000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:21209400-21210200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:21209400-21210200	Enhancers	Colon Smooth Muscle	Colon
14	chr2:21209400-21210400	Enhancers	Psoas Muscle	Psoas
15	chr2:21209600-21210000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:21209600-21210200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr2:21209800-21210000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:21209800-21212400	Weak transcription	Fetal Muscle Leg	muscle

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